RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RPL14P50914 215 aaKnown RBP12□□□□□ -0.49
HDAC6-230ENST00000488543 PON2Q15165 354 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 BRAT1Q6PJG6 821 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 DHDDSQ86SQ9 333 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 SLC22A9Q8IVM8 553 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 KDM1BQ8NB78 822 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 LKAAEAR1Q8TD35 194 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 NAT14Q8WUY8 206 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 L3HYPDHQ96EM0 354 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 FAM129BQ96TA1 746 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 GSTO2Q9H4Y5 243 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 PAPOLBQ9NRJ5 636 aaKnown RBP12□□□□□ -0.49
HDAC6-230ENST00000488543 THAP10Q9P2Z0 257 aaPredicted RBP12□□□□□ -0.49
HDAC6-230ENST00000488543 PCDHGB4Q9UN71 923 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 POMPQ9Y244 141 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 PCDHB1Q9Y5F3 818 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 PCDHGB5Q9Y5G0 923 aa12□□□□□ -0.49
HDAC6-230ENST00000488543 PIKFYVEQ9Y2I7 2098 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 MAGEA13PA6NCF6 341 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 UBXN8O00124 270 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 CDC7O00311 574 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 KPNA3O00505 521 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 COX4I1P13073 169 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 IL9P15248 144 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 EIF2DP41214 584 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PKNOX1P55347 436 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 ATP6V0D1P61421 351 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 TRIP10Q15642 601 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 ZRSR2Q15696 482 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 SMAD2Q15796 467 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 GPR33Q49SQ1 333 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 UNC50Q53HI1 259 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PTCRAQ6ISU1 281 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 RPS27LQ71UM5 84 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 CHPFQ8IZ52 775 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 NKAPQ8N5F7 415 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PHF21BQ96EK2 531 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 CNDP1Q96KN2 507 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 SPATS2LQ9NUQ6 558 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 TRMT6Q9UJA5 497 aaKnown RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PIAS3Q9Y6X2 628 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 TMEM233B4DJY2 109 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 STX16-NPEPL1H3BU86 382 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 KERAO60938 352 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 IMPDH1P20839 514 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 VIPR1P32241 457 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 IRX1P78414 480 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 ZNF678Q5SXM1 525 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 LYPLAL1Q5VWZ2 237 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 SLC30A9Q6PML9 568 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 CPNE9Q8IYJ1 553 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 RBFAQ8N0V3 343 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 NXPE1Q8N323 547 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 ZNF513Q8N8E2 541 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 SNX31Q8N9S9 440 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 EXT2Q93063 718 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PBXIP1Q96AQ6 731 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 LENG8Q96PV6 779 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-230ENST00000488543 C1orf21Q9H246 121 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 TNFRSF12AQ9NP84 129 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 PRSS16Q9NQE7 514 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 DHRS7Q9Y394 339 aa11.99□□□□□ -0.49
HDAC6-230ENST00000488543 MYOCOSA0A1B0GUC4 107 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 A0A1B0GVG6 124 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 NPEPPSL1A6NEC2 478 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 UPK3BL1B0FP48 263 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 UPK3BL2E5RIL1 263 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 EGFP01133 1207 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 HNRNPLP14866 589 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 ZNF7P17097 686 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CHRM3P20309 590 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 KIR2DL1P43626 348 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 SPINT3P49223 89 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 NUDT2P50583 147 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 HK2P52789 917 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 POLR2LP62875 67 aaKnown RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 RALGDSQ12967 914 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 KLF10Q13118 480 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 TSNQ15631 228 aaKnown RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 FBXL19Q6PCT2 694 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 SNX32Q86XE0 403 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 MMAAQ8IVH4 418 aaKnown RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 EEF1AKMT1Q8WVE0 214 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 LINGO1Q96FE5 620 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CATSPER2Q96P56 530 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 PLEKHG4BQ96PX9 1271 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 NUF2Q9BZD4 464 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 PCDH12Q9NPG4 1184 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 DKK3Q9UBP4 350 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CRLS1Q9UJA2 301 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 TMPRSS11EQ9UL52 423 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 FIS1Q9Y3D6 152 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 STON1Q9Y6Q2 735 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 LRRK1Q38SD2 2015 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 EDDM13A0A1B0GTR0 161 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 C16orf96A6NNT2 1141 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 HDAC3O15379 428 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CFLARO15519 480 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 TBCCQ15814 346 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 GRAMD1BQ3KR37 738 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms