RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 NVLO15381 856 aaKnown RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 HTRA2O43464 458 aaPredicted RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 RASGRP1O95267 797 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 METTL18O95568 372 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 NDST3O95803 873 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 AGTP01019 485 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 APRTP07741 180 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 ZSCAN5DPP0CG00 497 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SFTPCP11686 197 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 CTPS1P17812 591 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 HLA-DPA1P20036 260 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 MPSTP25325 297 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 CCKBRP32239 447 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 BLKP51451 505 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SRP54P61011 504 aaKnown RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 CDK16Q00536 496 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 C2orf54Q08AI8 447 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 TRAF2Q12933 501 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 CALCOCO2Q13137 446 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SKIDA1Q1XH10 827 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 GLE1Q53GS7 698 aaKnown RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 DENND2CQ68D51 928 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 KCTD16Q68DU8 428 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 C8orf74Q6P047 294 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 TTC27Q6P3X3 843 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 XKR5Q6UX68 686 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 TMPRSS9Q7Z410 1059 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 FSTL5Q8N475 847 aaPredicted RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 DTWD1Q8N5C7 304 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 VOPP1Q96AW1 172 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SCRN2Q96FV2 425 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 TBATAQ96M53 351 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 FICDQ9BVA6 458 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 C1QTNF7Q9BXJ2 289 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 TDRD1Q9BXT4 1180 aaKnown RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 GPR63Q9BZJ6 419 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SLC25A18Q9H1K4 315 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 HACD3Q9P035 362 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 ACSL6Q9UKU0 697 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 OR1A2Q9Y585 309 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 RNF215Q9Y6U7 377 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 SPTAN1Q13813 2472 aaKnown RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 LOC285095A0A1B0GVY8 99 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 TRAFD1O14545 582 aaPredicted RBP8.64□□□□□ -1.03
USP4-213ENST00000488520 TTI1O43156 1089 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 CRTAMO95727 393 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 AP2A1O95782 977 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 TNFP01375 233 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PCCBP05166 539 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 FGF1P05230 155 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 MMP2P08253 660 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PDHA1P08559 390 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ELFN1P0C7U0 828 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PCSK2P16519 638 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ZNF30P17039 623 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 VIPR1P32241 457 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 EIF1AXP47813 144 aaKnown RBP8.64□□□□□ -1.03
USP4-213ENST00000488520 NPY2RP49146 381 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PDE1BQ01064 536 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 CDH17Q12864 832 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 HYAL2Q12891 473 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 GALNT3Q14435 633 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 SPARCL1Q14515 664 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 INPP5AQ14642 412 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 NFATC4Q14934 902 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 LRRC14Q15048 493 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ACOX1Q15067 660 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 SLC1A5Q15758 541 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 IGFBP7Q16270 282 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 WSCD2Q2TBF2 565 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 FAM182AQ5T1J6 154 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ALKBH2Q6NS38 261 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 LVRNQ6Q4G3 990 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 TAF8Q7Z7C8 310 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PRUNE1Q86TP1 453 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PPIL6Q8IXY8 311 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 FAM46DQ8NEK8 389 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 GPR156Q8NFN8 814 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PIH1D2Q8WWB5 315 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 SLCO2A1Q92959 643 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ECHDC3Q96DC8 303 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PDXPQ96GD0 296 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 APOOQ9BUR5 198 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 CARD6Q9BX69 1037 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 TRIM31Q9BZY9 425 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 SEMA6CQ9H3T2 930 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 TRABDQ9H4I3 376 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 RDH14Q9HBH5 336 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 MAGEE1Q9HCI5 957 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PCDH12Q9NPG4 1184 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 MRPL40Q9NQ50 206 aaKnown RBP8.64□□□□□ -1.03
USP4-213ENST00000488520 RAD18Q9NS91 495 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 BFARQ9NZS9 450 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 KLQ9UEF7 1012 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 MOSPD1Q9UJG1 213 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 ANAPC5Q9UJX4 755 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 PKP3Q9Y446 797 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 CCDC88CQ9P219 2028 aa8.64□□□□□ -1.03
USP4-213ENST00000488520 USP9YO00507 2555 aaPredicted RBP8.64□□□□□ -1.03
USP4-213ENST00000488520 MED13Q9UHV7 2174 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms