RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PXNP49023 591 aaPredicted RBP13.98□□□□□ -0.17
CUX1-209ENST00000487284 ADPRHP54922 357 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 HERVK_113P63132 956 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 TUBB3Q13509 450 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 CFAP157Q5JU67 520 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 GPRC6AQ5T6X5 926 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 FRMD7Q6ZUT3 714 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 STON2Q8WXE9 905 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 SCAMP4Q969E2 229 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 COQ10AQ96MF6 247 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 EBF4Q9BQW3 602 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 TRMOQ9BU70 441 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 ZSCAN5AQ9BUG6 496 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 ERVK-6Q9BXR3 956 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 TPSD1Q9BZJ3 242 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 GSTO2Q9H4Y5 243 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 SARS2Q9NP81 518 aaKnown RBP13.98□□□□□ -0.17
CUX1-209ENST00000487284 ITM2CQ9NQX7 267 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 USP36Q9P275 1121 aaKnown RBP13.98□□□□□ -0.17
CUX1-209ENST00000487284 KLHL42Q9P2K6 505 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 ZFP69BQ9UJL9 534 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 RNF112Q9ULX5 631 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 TMCO1Q9UM00 188 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 NCKAP1Q9Y2A7 1128 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 COQ6Q9Y2Z9 468 aa13.98□□□□□ -0.17
CUX1-209ENST00000487284 PRR23AA6NEV1 266 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 SYCE1LA8MT33 242 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 MATN2O00339 956 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 TSPAN6O43657 245 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 KLK8O60259 260 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 FSBPO95073 299 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 PCDH8O95206 1070 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 SLC25A14O95258 325 aaPredicted RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 C6P13671 934 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 ACSL1P33121 698 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 MAGEA9P43362 315 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 RPL14P50914 215 aaKnown RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 ACTN3Q08043 901 aaPredicted RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 SFSWAPQ12872 951 aaKnown RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 ACOX1Q15067 660 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 ZNF678Q5SXM1 525 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 CYP2U1Q7Z449 544 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 ZBTB2Q8N680 514 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 PTGR2Q8N8N7 351 aaPredicted RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 CXorf40AQ8TE69 158 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 EXT2Q93063 718 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 PHF21BQ96EK2 531 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 VPS35Q96QK1 796 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 PANX3Q96QZ0 392 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 IER2Q9BTL4 223 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 RIOK2Q9BVS4 552 aaKnown RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 ABCG8Q9H221 673 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 CYP8B1Q9UNU6 501 aa13.97□□□□□ -0.17
CUX1-209ENST00000487284 ZFC3H1O60293 1989 aaKnown RBP13.97□□□□□ -0.17
CUX1-209ENST00000487284 FADS2P1A8MWK0 482 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SUPT3HB4E1H0 165 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SLCO1B7G3V0H7 640 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 K7ESF4 209 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 FCHO1O14526 889 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 HDAC3O15379 428 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 MAGEC1O60732 1142 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SUPT3HO75486 399 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 DGKAP23743 735 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 RGS4P49798 205 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 IDH3AP50213 366 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 CCR3P51677 355 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 NCALDP61601 193 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 CREB5Q02930 508 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 ZNF284Q2VY69 593 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 UNC50Q53HI1 259 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SEL1L3Q68CR1 1132 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 EPGNQ6UW88 154 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 ZNF765Q7L2R6 523 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 RAB44Q7Z6P3 723 aaPredicted RBP13.96□□□□□ -0.17
CUX1-209ENST00000487284 ALYREFQ86V81 257 aaKnown RBP13.96□□□□□ -0.17
CUX1-209ENST00000487284 CAMKK1Q8N5S9 505 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 DDHD1Q8NEL9 900 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 NAT14Q8WUY8 206 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 DTD2Q96FN9 168 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SAR1AQ9NR31 198 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 SPATS2LQ9NUQ6 558 aaKnown RBP13.96□□□□□ -0.17
CUX1-209ENST00000487284 VTI1BQ9UEU0 232 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 ZDHHC2Q9UIJ5 367 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 EML5Q05BV3 1969 aa13.96□□□□□ -0.17
CUX1-209ENST00000487284 STX16-NPEPL1H3BU86 382 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 EIF3FO00303 357 aaPredicted RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 STX16O14662 325 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 WNT9AO14904 365 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 GRID2O43424 1007 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 LZTS3O60299 673 aaPredicted RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 CCDC22O60826 627 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 DNAJC8O75937 253 aaPredicted RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 RECQL5O94762 991 aaPredicted RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 TRIM16O95361 564 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 IGLV3-19P01714 112 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 OR56A5P0C7T3 313 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 GFAPP14136 432 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 ITGB6P18564 788 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 PFKFB4Q16877 469 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 TTLL9Q3SXZ7 439 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms