RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 PRDM8Q9NQV8 689 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 CPNE7Q9UBL6 633 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 SLC23A2Q9UGH3 650 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 FAM221BA6H8Z2 402 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 DUX1O43812 170 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ESR1P03372 595 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 RPLP0P05388 317 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ARNTP27540 789 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ARCN1P48444 511 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 CDKN1CP49918 316 aaPredicted RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 DRG2P55039 364 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 UBE2IP63279 158 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 DHX9Q08211 1270 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 CRYMQ14894 314 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 SEPT7Q16181 437 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 MAP9Q49MG5 647 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 PERM1Q5SV97 790 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 DUPD1Q68J44 220 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ZNF470Q6ECI4 717 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 PTRHD1Q6GMV3 140 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 KLHL35Q6PF15 583 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 CILP2Q8IUL8 1156 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 DCBLD1Q8N8Z6 715 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 GSDMBQ8TAX9 411 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ZFPM2Q8WW38 1151 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 AHCYL2Q96HN2 611 aaKnown RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 SIGLEC10Q96LC7 697 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 SCNM1Q9BWG6 230 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 CCDC68Q9H2F9 335 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 LRRN3Q9H3W5 708 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 SYNDIG1Q9H7V2 258 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 EPB41L5Q9HCM4 733 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 C20orf96Q9NUD7 363 aaPredicted RBP14.36□□□□□ -0.11
LIMS3-205ENST00000487150 KCNK4Q9NYG8 393 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 SNX24Q9Y343 169 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 MSRB2Q9Y3D2 182 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 FAM169AQ9Y6X4 670 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 COLEC10Q9Y6Z7 277 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 PCNX2A6NKB5 2137 aa14.36□□□□□ -0.11
LIMS3-205ENST00000487150 ZCWPW2A0A1B0GU75 182 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 D6RAR5 112 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 NTN3O00634 580 aaPredicted RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 SGTAO43765 313 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 KDM1AO60341 852 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 MT-CO3P00414 261 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 APOA4P06727 396 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 MYF5P13349 255 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 RPL10P27635 214 aaKnown RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CA5AP35218 305 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CD151P48509 253 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CBLBQ13191 982 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 EIF3IQ13347 325 aaKnown RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 FRG1Q14331 258 aaKnown RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 NFE2L1Q14494 772 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CDCP2Q5VXM1 449 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 KIAA0408Q6ZU52 694 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 MMGT1Q8N4V1 131 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CLDN19Q8N6F1 224 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 ASZ1Q8WWH4 475 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 ELMO1Q92556 727 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 TMEM159Q96B96 161 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 CARD6Q9BX69 1037 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 STRADBQ9C0K7 418 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 TSPYL1Q9H0U9 437 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 DPH5Q9H2P9 285 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 COG4Q9H9E3 785 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 AKAP7Q9P0M2 348 aaPredicted RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 ZC3H7BQ9UGR2 993 aaKnown RBP14.35□□□□□ -0.11
LIMS3-205ENST00000487150 WASF3Q9UPY6 502 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 COMMD10Q9Y6G5 202 aa14.35□□□□□ -0.11
LIMS3-205ENST00000487150 UBA6A0AVT1 1052 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 E7ESA3 106 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 CPNE6O95741 557 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 RPN2P04844 631 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 PRSS56P0CW18 603 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 MTHFD1P11586 935 aaKnown RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 ALDH4A1P30038 563 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 PPM1FP49593 454 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 SQSTM1Q13501 440 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 KRT33BQ14525 404 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 CES3Q6UWW8 571 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 CCNI2Q6ZMN8 369 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 PIM3Q86V86 326 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 KCNMB4Q86W47 210 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 CFAP206Q8IYR0 622 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 Q8N9G6 341 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 PATE1Q8WXA2 126 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 NXPE2Q96DL1 559 aa14.34□□□□□ -0.11
LIMS3-205ENST00000487150 IMP3Q9NV31 184 aaKnown RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 MARCH4Q9P2E8 410 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-205ENST00000487150 ARID1BQ8NFD5 2236 aaPredicted RBP14.33□□□□□ -0.12
LIMS3-205ENST00000487150 PPM1DO15297 605 aa14.33□□□□□ -0.12
LIMS3-205ENST00000487150 OR1I1O60431 355 aa14.33□□□□□ -0.12
LIMS3-205ENST00000487150 EML2O95834 649 aa14.33□□□□□ -0.12
LIMS3-205ENST00000487150 BRAFP15056 766 aa14.33□□□□□ -0.12
LIMS3-205ENST00000487150 CCKBRP32239 447 aa14.33□□□□□ -0.12
LIMS3-205ENST00000487150 PDIA2Q13087 525 aaKnown RBP14.33□□□□□ -0.12
LIMS3-205ENST00000487150 TRA2AQ13595 282 aaKnown RBP eCLIP14.33□□□□□ -0.12
LIMS3-205ENST00000487150 BOP1Q14137 746 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms