RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 WDR37Q9Y2I8 494 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 UTP11Q9Y3A2 253 aaKnown RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 PRSS21Q9Y6M0 314 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 ARHGEF17Q96PE2 2063 aaPredicted RBP20.5■□□□□ 0.87
SEC13-217ENST00000482647 ASXL3Q9C0F0 2248 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 A0A1W2PQM1 296 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 FTH1P02794 183 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 PGAM1P18669 254 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 ARL4CP56559 192 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 DHX9Q08211 1270 aaKnown RBP20.5■□□□□ 0.87
SEC13-217ENST00000482647 CALCOCO2Q13137 446 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 CLCA4Q14CN2 919 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 BBS9Q3SYG4 887 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 AMZ1Q400G9 498 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 ZNF449Q6P9G9 518 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 MARCH9Q86YJ5 346 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 MNS1Q8NEH6 495 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 GPR150Q8NGU9 434 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 GRAMD1AQ96CP6 724 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 CXorf40BQ96DE9 158 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 EBNA1BP2Q99848 306 aaKnown RBP20.5■□□□□ 0.87
SEC13-217ENST00000482647 WHRNQ9P202 907 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 PSMD13Q9UNM6 376 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 MYLKQ15746 1914 aa20.5■□□□□ 0.87
SEC13-217ENST00000482647 ZCWPW2A0A1B0GU75 182 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 OR52A4PA6NMU1 304 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 GOLGA8KD6RF30 607 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 GOLGA8TH3BQL2 631 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 PRMT5O14744 637 aaPredicted RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 CSO75390 466 aaKnown RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 TTC4O95801 387 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 SLC35G4P0C7Q5 338 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 SLC19A1P41440 591 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 THOC5Q13769 683 aaKnown RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 RPE65Q16518 533 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 HIF1AQ16665 826 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 CLPPQ16740 277 aaPredicted RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 LONRF1Q17RB8 773 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 ISXQ2M1V0 245 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 MSS51Q4VC12 460 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 RNF187Q5TA31 235 aaPredicted RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 LRRC6Q86X45 466 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 RBM12BQ8IXT5 1001 aaKnown RBP20.49■□□□□ 0.87
SEC13-217ENST00000482647 TSSK1BQ9BXA7 367 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 WWP1Q9H0M0 922 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 RAB17Q9H0T7 212 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 COG4Q9H9E3 785 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 UCK1Q9HA47 277 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 POT1Q9NUX5 634 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 MRFAP1Q9Y605 127 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 FAM169AQ9Y6X4 670 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 PLXNB3Q9ULL4 1909 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 KNTC1P50748 2209 aa20.49■□□□□ 0.87
SEC13-217ENST00000482647 TMX2-CTNND1H3BSU7 103 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 CASC3O15234 703 aaKnown RBP20.48■□□□□ 0.87
SEC13-217ENST00000482647 CD1CP29017 333 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 GPLD1P80108 840 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 RPA4Q13156 261 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 DUPD1Q68J44 220 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.48■□□□□ 0.87
SEC13-217ENST00000482647 OR10G6Q8NH81 332 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 ELMO1Q92556 727 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 LRRC39Q96DD0 335 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 AHCYL2Q96HN2 611 aaKnown RBP20.48■□□□□ 0.87
SEC13-217ENST00000482647 PWWP2AQ96N64 755 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 DPH5Q9H2P9 285 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 SLC40A1Q9NP59 571 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 C20orf96Q9NUD7 363 aaPredicted RBP20.48■□□□□ 0.87
SEC13-217ENST00000482647 VPS9D1Q9Y2B5 631 aa20.48■□□□□ 0.87
SEC13-217ENST00000482647 IGHV1OR21-1A0A087WYE8 117 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 D6RAR5 112 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 LIN7AO14910 233 aaPredicted RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 TP73O15350 636 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 CPNE6O95741 557 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 OGNP20774 298 aaKnown RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 PPM1FP49593 454 aaPredicted RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 EPHA4P54764 986 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 SQSTM1Q13501 440 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 TYSND1Q2T9J0 566 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 ZNF658BQ4V348 819 aaPredicted RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 PTRHD1Q6GMV3 140 aaKnown RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 XKR5Q6UX68 686 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 TMEM26Q6ZUK4 368 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 USP53Q70EK8 1073 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 PIM3Q86V86 326 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 ZNF761Q86XN6 746 aaPredicted RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 CILP2Q8IUL8 1156 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 LMNTD2Q8IXW0 634 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 EPB41L5Q9HCM4 733 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 GNPTGQ9UJJ9 305 aa20.47■□□□□ 0.87
SEC13-217ENST00000482647 ATXN7L1Q9ULK2 861 aaPredicted RBP20.47■□□□□ 0.87
SEC13-217ENST00000482647 BANF1O75531 89 aa20.46■□□□□ 0.87
SEC13-217ENST00000482647 MTHFD1P11586 935 aaKnown RBP20.46■□□□□ 0.87
SEC13-217ENST00000482647 RPS3P23396 243 aaKnown RBP eCLIP20.46■□□□□ 0.876e-14■■■■□ 26.5
SEC13-217ENST00000482647 CD151P48509 253 aa20.46■□□□□ 0.87
SEC13-217ENST00000482647 PLOD1Q02809 727 aaPredicted RBP20.46■□□□□ 0.87
SEC13-217ENST00000482647 CAMK2BQ13554 666 aa20.46■□□□□ 0.87
SEC13-217ENST00000482647 MAP9Q49MG5 647 aa20.46■□□□□ 0.87
SEC13-217ENST00000482647 SPANXN3Q5MJ09 141 aa20.46■□□□□ 0.87
SEC13-217ENST00000482647 NKAIN2Q5VXU1 208 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms