RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SYTL3Q4VX76 610 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 KHDC1Q4VXA5 237 aaKnown RBP9.99□□□□□ -0.81
USP39-215ENST00000481409 PPM1JQ5JR12 505 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 N4BP2L1Q5TBK1 243 aaPredicted RBP9.99□□□□□ -0.81
USP39-215ENST00000481409 TTC23LQ6PF05 361 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 LVRNQ6Q4G3 990 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 TMEM207Q6UWW9 146 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 GCNT7Q6ZNI0 430 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 RABEPKQ7Z6M1 372 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 AMZ2Q86W34 360 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 TRAPPC5Q8IUR0 188 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 SLC22A9Q8IVM8 553 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 SDR16C5Q8N3Y7 309 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 FSTL5Q8N475 847 aaPredicted RBP9.99□□□□□ -0.81
USP39-215ENST00000481409 SIDT2Q8NBJ9 832 aaKnown RBP9.99□□□□□ -0.81
USP39-215ENST00000481409 PHC3Q8NDX5 983 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 MAGEC3Q8TD91 643 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 KCTD4Q8WVF5 259 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 GAB3Q8WWW8 586 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 ELMO1Q92556 727 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 NELL1Q92832 810 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 KLK6Q92876 244 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 NXNL1Q96CM4 212 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 BMFQ96LC9 184 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 FOPNLQ96NB1 174 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 GPR78Q96P69 363 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 TRIM54Q9BYV2 358 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 RDH14Q9HBH5 336 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 CD93Q9NPY3 652 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 IGSF5Q9NSI5 407 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 MBD1Q9UIS9 605 aaPredicted RBP9.99□□□□□ -0.81
USP39-215ENST00000481409 DGKBQ9Y6T7 804 aa9.99□□□□□ -0.81
USP39-215ENST00000481409 PRSS38A1L453 326 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 POM121BA6NF01 834 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 OR2AG2A6NM03 316 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 IQCF5A8MTL0 148 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 MEI4A8MW99 385 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 KLF11O14901 512 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 KERAO60938 352 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 MTX2O75431 263 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 POP7O75817 140 aaKnown RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 TSPAN12O95859 305 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 PDGFBP01127 241 aaPredicted RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 RPN2P04844 631 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CEACAM5P06731 702 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CPA3P15088 417 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 TFEBP19484 476 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ATP5F1P24539 256 aaPredicted RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 CD38P28907 300 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 HOXD12P35452 270 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 SERPINB5P36952 375 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CTSCP53634 463 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CDKL1Q00532 357 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 NFKB2Q00653 900 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 PDK4Q16654 411 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 PYCR3Q53H96 274 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 TECRLQ5HYJ1 363 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ATG16L1Q676U5 607 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 RGS9BPQ6ZS82 235 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 Q6ZSR6 202 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CDHR3Q6ZTQ4 885 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 DET1Q7L5Y6 550 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ISCA2Q86U28 154 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 PIM3Q86V86 326 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 GALNT13Q8IUC8 556 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CPNE9Q8IYJ1 553 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 SLC22A15Q8IZD6 547 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 KIRREL3Q8IZU9 778 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 CCDC63Q8NA47 563 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 FBXO15Q8NCQ5 510 aaPredicted RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 GIMAP7Q8NHV1 300 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 EEF1AKMT1Q8WVE0 214 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ANKRD49Q8WVL7 239 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 DYDC1Q8WWB3 177 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 RLN3Q8WXF3 142 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 LINGO1Q96FE5 620 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 KLHDC7BQ96G42 594 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ZC3H10Q96K80 434 aaKnown RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 SCYL1Q96KG9 808 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 FAM111AQ96PZ2 611 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 ORAI3Q9BRQ5 295 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 LGR4Q9BXB1 951 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 SARS2Q9NP81 518 aaKnown RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 TRNAU1APQ9NX07 287 aaKnown RBP9.98□□□□□ -0.81
USP39-215ENST00000481409 TMEM216Q9P0N5 145 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 COPG2Q9UBF2 871 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 KLQ9UEF7 1012 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 SUSD2Q9UGT4 822 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 OR1A2Q9Y585 309 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 COL6A3P12111 3177 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 NUMA1Q14980 2115 aa9.98□□□□□ -0.81
USP39-215ENST00000481409 SPTY2D1-AS1A0A0U1RR47 76 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 PABPN1LA6NDY0 278 aaKnown RBP9.97□□□□□ -0.81
USP39-215ENST00000481409 FOXO6A8MYZ6 492 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 TARM1B6A8C7 271 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 GFYI3L273 518 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 SMIM24O75264 130 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 RASGRP1O95267 797 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 MATN4O95460 622 aa9.97□□□□□ -0.81
USP39-215ENST00000481409 TNFP01375 233 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms