RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 CDK18Q07002 472 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 ADCY2Q08462 1091 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 PRKAA1Q13131 559 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 XRCC4Q13426 336 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 GPR19Q15760 415 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 RPE65Q16518 533 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 LDLRAP1Q5SW96 308 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 ZFYVE27Q5T4F4 411 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 LYPLAL1Q5VWZ2 237 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 GPR150Q8NGU9 434 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 DTX3LQ8TDB6 740 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 SNRNP40Q96DI7 357 aaKnown RBP12.3□□□□□ -0.44
SKA3-206ENST00000475251 MOCOSQ96EN8 888 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 TCTN2Q96GX1 697 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 IP6K3Q96PC2 410 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 TRIB3Q96RU7 358 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 DPH2Q9BQC3 489 aaPredicted RBP12.3□□□□□ -0.44
SKA3-206ENST00000475251 SLC7A5P2Q9GIP4 190 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 IMP3Q9NV31 184 aaKnown RBP12.3□□□□□ -0.44
SKA3-206ENST00000475251 LCMT1Q9UIC8 334 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 BTRCQ9Y297 605 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 B3GNT3Q9Y2A9 372 aa12.3□□□□□ -0.44
SKA3-206ENST00000475251 BZW2Q9Y6E2 419 aaKnown RBP12.3□□□□□ -0.44
SKA3-206ENST00000475251 KLHL33A6NCF5 533 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 ANKUB1A6NFN9 424 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 C9J4A7 227 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 MATN2O00339 956 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 POP7O75817 140 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 IPO13O94829 963 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 PIRTP0C851 137 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 MTHFD1P11586 935 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 ELAVL4P26378 380 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 HMGCLP35914 325 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 GJC1P36383 396 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 TNNT3P45378 269 aaPredicted RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 GBE1Q04446 702 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 NAA30Q147X3 362 aaPredicted RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 PCSK7Q16549 785 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 ATP13A5Q4VNC0 1218 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 KHDC1Q4VXA5 237 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 PLEKHS1Q5SXH7 462 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 CERS6Q6ZMG9 384 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 TTC30BQ8N4P2 665 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 FAF2Q96CS3 445 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 IMP4Q96G21 291 aaKnown RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 BTBD6Q96KE9 485 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 FER1L6-AS2Q96M78 137 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 C17orf62Q9BQA9 187 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 DHRS4Q9BTZ2 278 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 ILKAPQ9H0C8 392 aaPredicted RBP12.29□□□□□ -0.44
SKA3-206ENST00000475251 THAP2Q9H0W7 228 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 SLC25A51Q9H1U9 297 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 TRABDQ9H4I3 376 aa12.29□□□□□ -0.44
SKA3-206ENST00000475251 KRT86O43790 486 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 NDST3O95803 873 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 CYP1A2P05177 515 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 CD63P08962 238 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 HBQ1P09105 142 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 MSL3P1P0C860 447 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 PYGMP11217 842 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 SKILP12757 684 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 CYP2A7P20853 494 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 AGXTP21549 392 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 NDUFS1P28331 727 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 RORAP35398 523 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 HADHAP40939 763 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 PER3P56645 1201 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 AP1B1Q10567 949 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 ZBTB17Q13105 803 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 ITGA9Q13797 1035 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 NCF4Q15080 339 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 KYNUQ16719 465 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 E4F1Q66K89 784 aaPredicted RBP12.28□□□□□ -0.44
SKA3-206ENST00000475251 SYTL1Q8IYJ3 562 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 CNTD1Q8N815 330 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 SLC38A9Q8NBW4 561 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 CLEC1AQ8NC01 280 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 NAT10Q9H0A0 1025 aaKnown RBP12.28□□□□□ -0.44
SKA3-206ENST00000475251 ACTR5Q9H9F9 607 aaPredicted RBP12.28□□□□□ -0.44
SKA3-206ENST00000475251 AGPAT4Q9NRZ5 378 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 C1GALT1Q9NS00 363 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 ASF1BQ9NVP2 202 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 ACSL5Q9ULC5 683 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 PSMD13Q9UNM6 376 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 COLEC10Q9Y6Z7 277 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 ITPR2Q14571 2701 aa12.28□□□□□ -0.44
SKA3-206ENST00000475251 DOPEY1Q5JWR5 2465 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 OR6C74A6NCV1 312 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 PPP1R12AO14974 1030 aaPredicted RBP12.27□□□□□ -0.45
SKA3-206ENST00000475251 HLA-DPA1P20036 260 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 CDH3P22223 829 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 SPAM1P38567 509 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 SLC10A2Q12908 348 aaPredicted RBP12.27□□□□□ -0.45
SKA3-206ENST00000475251 ATP1A4Q13733 1029 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 NFE2L1Q14494 772 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 PDK1Q15118 436 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 PPP2R5EQ16537 467 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 LONRF2Q1L5Z9 754 aa12.27□□□□□ -0.45
SKA3-206ENST00000475251 PLEKHN1Q494U1 663 aaPredicted RBP12.27□□□□□ -0.45
SKA3-206ENST00000475251 C1QL3Q5VWW1 255 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms