RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PPP1R2P1Q96PQ5 205 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 TEFMQ96QE5 360 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 SLC40A1Q9NP59 571 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 IMPACTQ9P2X3 320 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 CRLS1Q9UJA2 301 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 CAPN6Q9Y6Q1 641 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 MAST4O15021 2626 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 CCL22O00626 93 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 ZNF189O75820 626 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 RASSF9O75901 435 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 LIFP15018 202 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 CAPZBP47756 277 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 FOXM1Q08050 763 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 RPE65Q16518 533 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 DENND5AQ6IQ26 1287 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 IRGCQ6NXR0 463 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 ATG14Q6ZNE5 492 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 RBM12BQ8IXT5 1001 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 TAB3Q8N5C8 712 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 FAM71DQ8N9W8 422 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 SLC12A9Q9BXP2 914 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 FAM96AQ9H5X1 160 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 FBXO8Q9NRD0 319 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 R3HDM2Q9Y2K5 976 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 CFAP20Q9Y6A4 193 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 DNMT3AQ9Y6K1 912 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 SPTBP11277 2137 aa15.4■□□□□ 0.06
CCDC88B-205ENST00000472524 BSNQ9UPA5 3926 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 TCRBV7S2A1N4TA0A589 114 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 POLR1CO15160 346 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 ANKRD34CP0C6C1 535 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 SFTPCP11686 197 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 ZNF140P52738 457 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 XIAPP98170 497 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 PDE1BQ01064 536 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 MSLNQ13421 630 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 PLCL1Q15111 1095 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 DUS1LQ6P1R4 473 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 FAM92BQ6ZTR7 304 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 MICALCLQ6ZW33 695 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 DCUN1D1Q96GG9 259 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 ZNF514Q96K75 400 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 ZPBPQ9BS86 351 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 WWP1Q9H0M0 922 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 IMP3Q9NV31 184 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 GEMIN8Q9NWZ8 242 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 SIDT1Q9NXL6 827 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 PILRAQ9UKJ1 303 aa15.39■□□□□ 0.05
CCDC88B-205ENST00000472524 UBR5O95071 2799 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 MGAT4DA6NG13 374 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 GOLGA6L6A8MZA4 724 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 KIF1CO43896 1103 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 STK17BO94768 372 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 METTL18O95568 372 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 ITGALP20701 1170 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 GDF10P55107 478 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 PPP1CAP62136 330 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 SH3BP2P78314 561 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 KLF1Q13351 362 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 SEPT6Q14141 434 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 PARP6Q2NL67 630 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 CACHD1Q5VU97 1274 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 NLGN4XQ8N0W4 816 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 NLGN4YQ8NFZ3 816 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 ULK4Q96C45 1275 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 ZDHHC12Q96GR4 267 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 DNAJC1Q96KC8 554 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 C12orf66Q96MD2 445 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 TMEM121Q9BTD3 319 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 SLC25A18Q9H1K4 315 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 ZNF768Q9H5H4 540 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 ARNT2Q9HBZ2 717 aa15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 FEZ2Q9UHY8 353 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-205ENST00000472524 SPTA1P02549 2419 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 LDB2O43679 373 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 RALBP11234 206 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 MTHFD1P11586 935 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 TPH1P17752 444 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 MC4RP32245 332 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 HADHAP40939 763 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 BCL7AQ4VC05 210 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 SEL1L2Q5TEA6 688 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 METRNLQ641Q3 311 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 KCTD11Q693B1 232 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 BORAQ6PGQ7 559 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 TIPARPQ7Z3E1 657 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 PRSS42Q7Z5A4 293 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 SNX20Q7Z614 316 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 KLHDC8BQ8IXV7 354 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 UNC5BQ8IZJ1 945 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 NXPE1Q8N323 547 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 OR2L2Q8NH16 312 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 SLC35B2Q8TB61 432 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 ATG4AQ8WYN0 398 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 HES6Q96HZ4 224 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 ELMO2Q96JJ3 720 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 OR6C1Q96RD1 312 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 LRRC40Q9H9A6 602 aa15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 GPN2Q9H9Y4 310 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-205ENST00000472524 PIH1D1Q9NWS0 290 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms