RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NHSL2Q5HYW2 709 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 IRAK1BP1Q5VVH5 260 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CERS6Q6ZMG9 384 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 Q6ZNB5 142 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ADAMTSL2Q86TH1 951 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CBR4Q8N4T8 237 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 DCAF4L2Q8NA75 395 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 DGCR14Q96DF8 476 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 TMEM169Q96HH4 297 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 KCTD14Q9BQ13 255 aaPredicted RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 TNKS2Q9H2K2 1166 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 IPPKQ9H8X2 491 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PFDN4Q9NQP4 134 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 AGPAT4Q9NRZ5 378 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 SUN2Q9UH99 717 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 LEF1Q9UJU2 399 aaPredicted RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 COMMD3-BMI1R4GMX3 469 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CROCCQ5TZA2 2017 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 FAM234BA2RU67 622 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 DLGAP1O14490 977 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TAPBPO15533 448 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TRBC1P01850 177 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 BPIP17213 487 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PPP3CCP48454 512 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PIK3CGP48736 1102 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 EPHB3P54753 998 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 CYP4F8P98187 520 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PLIN5Q00G26 463 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PLOD1Q02809 727 aaPredicted RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 CREB5Q02930 508 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 BCL2L1Q07817 233 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RAB33AQ14088 237 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PHKG1Q16816 387 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RFTN2Q52LD8 501 aaPredicted RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 TPGS1Q6ZTW0 290 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 ZSWIM9Q86XI8 627 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 ZFP28Q8NHY6 868 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 APOL5Q9BWW9 433 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 ACTL8Q9H568 366 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 IL21Q9HBE4 155 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 OLAHQ9NV23 265 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 ZIM2Q9NZV7 527 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 NDUFA13Q9P0J0 144 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PCDH10Q9P2E7 1040 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 INSL5Q9Y5Q6 135 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TCRBV5S2A0A599 114 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 CCDC160A6NGH7 325 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 LSM1O15116 133 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 RAD51BO15315 384 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RSL1D1O76021 490 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 MT-ND1P03886 318 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 GNAO1P09471 354 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 FASP25445 335 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RPL10P27635 214 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 DGKQP52824 942 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TRAF3Q13114 568 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PRKG2Q13237 762 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 NR6A1Q15406 480 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 CHRNA6Q15825 494 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 CDKN3Q16667 212 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 AP5B1Q2VPB7 878 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 KRT80Q6KB66 452 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RETSATQ6NUM9 610 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 SNX20Q7Z614 316 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 MILR1Q7Z6M3 343 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TSPAN33Q86UF1 283 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 RALGPS2Q86X27 583 aaPredicted RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 ZFAND4Q86XD8 727 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PTRH1Q86Y79 214 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 RBFAQ8N0V3 343 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 DEFB118Q96PH6 123 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 CCT7Q99832 543 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 C2orf49Q9BVC5 232 aaPredicted RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 CAAP1Q9H8G2 361 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 TLR9Q9NR96 1032 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 PTBP2Q9UKA9 531 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 TNPO3Q9Y5L0 923 aaKnown RBP8.81□□□□□ -1
SYNE1-217ENST00000466159 SLC4A7Q9Y6M7 1214 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 V9GYQ6 96 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 OBSL1O75147 1896 aa8.81□□□□□ -1
SYNE1-217ENST00000466159 COL4A6Q14031 1691 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 SCN8AQ9UQD0 1980 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 MYOFQ9NZM1 2061 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 FFAR3O14843 346 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GPR42O15529 346 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 ZNF821O75541 412 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 H6PDO95479 791 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 LATS1O95835 1130 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 GNRH1P01148 92 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 S100BP04271 92 aaPredicted RBP8.8□□□□□ -1
SYNE1-217ENST00000466159 ITGALP20701 1170 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 ACRV1P26436 265 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CCT8P50990 548 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 OR4D2P58180 307 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 LMAN2Q12907 356 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 LSAMPQ13449 338 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.8□□□□□ -1
SYNE1-217ENST00000466159 DGKKQ5KSL6 1271 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 CYP20A1Q6UW02 462 aa8.8□□□□□ -1
SYNE1-217ENST00000466159 BBS7Q8IWZ6 715 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms