RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SLC25A41Q8N5S1 370 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 RASGEF1AQ8N9B8 481 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 GALNT11Q8NCW6 608 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 ZNF398Q8TD17 642 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 P3H4Q92791 437 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 MAP3K3Q99759 626 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 SLC25A23Q9BV35 468 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TUBB2BQ9BVA1 445 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A7Q9HAW7 530 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A10Q9HAW8 530 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A8Q9HAW9 530 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 FANCEQ9HB96 536 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 IMP3Q9NV31 184 aaKnown RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 IL17CQ9P0M4 197 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 KLHL8Q9P2G9 620 aaPredicted RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 TMPRSS11EQ9UL52 423 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 NENFQ9UMX5 172 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 SPTA1P02549 2419 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 DOPEY2Q9Y3R5 2298 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 SYCE3A1L190 88 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 BLACEA4D250 179 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 OR5K3A6NET4 321 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 MGAT4DA6NG13 374 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 C2orf81A6NN90 581 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 K7EM74 188 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 STX7O15400 261 aaKnown RBP12.99□□□□□ -0.33
HMGB3-204ENST00000448905 CBFA2T2O43439 604 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 SPOPO43791 374 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 AGFG2O95081 481 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 EBLN1P0CF75 366 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 RALBP11234 206 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 HLA-DPA1P20036 260 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 PTPN3P26045 913 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 NDUFS1P28331 727 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 KCNAB1Q14722 419 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 SIRPB2Q5JXA9 342 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 FNBP1LQ5T0N5 605 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 ZNF449Q6P9G9 518 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 FAM199XQ6PEV8 388 aaPredicted RBP12.99□□□□□ -0.33
HMGB3-204ENST00000448905 FAM151BQ6UXP7 276 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 B4GALNT4Q76KP1 1039 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 GLT6D1Q7Z4J2 308 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 D2HGDHQ8N465 521 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 DDHD1Q8NEL9 900 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 CPT1CQ8TCG5 803 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 BLOC1S5Q8TDH9 187 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 MR1Q95460 341 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 FCRL5Q96RD9 977 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 CCM2Q9BSQ5 444 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 FSD1LQ9BXM9 530 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 ING2Q9H160 280 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 SERTAD3Q9UJW9 196 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 TRHDEQ9UKU6 1024 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 PCDHGB7Q9Y5F8 929 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 PCDHGA9Q9Y5G4 932 aaKnown RBP12.99□□□□□ -0.33
HMGB3-204ENST00000448905 HEBP2Q9Y5Z4 205 aa12.99□□□□□ -0.33
HMGB3-204ENST00000448905 OR6C74A6NCV1 312 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 OR2AG2A6NM03 316 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 CST8O60676 142 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 ZRANB2O95218 330 aaKnown RBP eCLIP12.98□□□□□ -0.33
HMGB3-204ENST00000448905 TIAF1O95411 115 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 SLC35G4P0C7Q5 338 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 MTHFD1P11586 935 aaKnown RBP12.98□□□□□ -0.33
HMGB3-204ENST00000448905 LPOP22079 712 aaPredicted RBP12.98□□□□□ -0.33
HMGB3-204ENST00000448905 MPP3Q13368 585 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 NFE2L1Q14494 772 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 PRKD1Q15139 912 aaPredicted RBP12.98□□□□□ -0.33
HMGB3-204ENST00000448905 SLC1A5Q15758 541 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 ASTE1Q2TB18 679 aaPredicted RBP12.98□□□□□ -0.33
HMGB3-204ENST00000448905 GPRC6AQ5T6X5 926 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 IZUMO3Q5VZ72 239 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 HPS6Q86YV9 775 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 TTC30BQ8N4P2 665 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 OR2L2Q8NH16 312 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 CPT1BQ92523 772 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 DCUN1D1Q96GG9 259 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 C12orf66Q96MD2 445 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 LRFN5Q96NI6 719 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 DNAJC7Q99615 494 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 SLC7A5P2Q9GIP4 190 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 SYTL2Q9HCH5 934 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 SOHLH2Q9NX45 425 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 ZNF451Q9Y4E5 1061 aa12.98□□□□□ -0.33
HMGB3-204ENST00000448905 C5orf60A6NFR6 353 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 ARGFXA6NJG6 315 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 HACD1B0YJ81 288 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 MEN1O00255 615 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 MATN2O00339 956 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 ANXA9O76027 345 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 RAB40ALP0C0E4 278 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 NFKB1P19838 968 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 PBLDP30039 288 aaPredicted RBP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 CTSCP53634 463 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 ADCY2Q08462 1091 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 WASHC5Q12768 1159 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 KAZNQ674X7 775 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 KDELC1Q6UW63 502 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 MFSD7Q6UXD7 560 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 ZC3H18Q86VM9 953 aaKnown RBP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 CFAP206Q8IYR0 622 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms