RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 DLGAP3O95886 979 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 ZNF28P17035 718 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 TPH1P17752 444 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 ITGB6P18564 788 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 AKT1P31749 480 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 CAPZBP47756 277 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 CDKN1CP49918 316 aaPredicted RBP20.31■□□□□ 0.84
SDC1-205ENST00000447124 GDF10P55107 478 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 FAM92BQ6ZTR7 304 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 UNC5BQ8IZJ1 945 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 NLGN4XQ8N0W4 816 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 UBL4BQ8N7F7 174 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 NLGN4YQ8NFZ3 816 aaPredicted RBP20.31■□□□□ 0.84
SDC1-205ENST00000447124 SLC35B2Q8TB61 432 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 KLHL6Q8WZ60 621 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 HES6Q96HZ4 224 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 IMPACTQ9P2X3 320 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 CFAP20Q9Y6A4 193 aaKnown RBP20.31■□□□□ 0.84
SDC1-205ENST00000447124 MIF4GDA9UHW6 222 aaKnown RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 NKX2-8O15522 239 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 CRTAMO95727 393 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 FAM87AP0C7U9 286 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 MAP4P27816 1152 aaKnown RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 FOXM1Q08050 763 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 BCL7AQ4VC05 210 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 CACHD1Q5VU97 1274 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 PRSS42Q7Z5A4 293 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 SYCE1Q8N0S2 351 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 LILRA3Q8N6C8 439 aaPredicted RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 TTC13Q8NBP0 860 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 SPDYE1Q8NFV5 336 aaPredicted RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 OR2L2Q8NH16 312 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 ZNF514Q96K75 400 aaPredicted RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 LINC00615Q96LM1 132 aaPredicted RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 RAB33BQ9H082 229 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 WWP1Q9H0M0 922 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 SEMA5BQ9P283 1151 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 IL17BQ9UHF5 180 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 CAPN6Q9Y6Q1 641 aa20.3■□□□□ 0.84
SDC1-205ENST00000447124 TLN1Q9Y490 2541 aaKnown RBP20.3■□□□□ 0.84
SDC1-205ENST00000447124 MTHFD1P11586 935 aaKnown RBP20.29■□□□□ 0.84
SDC1-205ENST00000447124 CDC25BP30305 580 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 IRGCQ6NXR0 463 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 DUS1LQ6P1R4 473 aaKnown RBP20.29■□□□□ 0.84
SDC1-205ENST00000447124 ZDHHC12Q96GR4 267 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 DNAJC1Q96KC8 554 aaKnown RBP20.29■□□□□ 0.84
SDC1-205ENST00000447124 OR6C1Q96RD1 312 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 ARHGAP9Q9BRR9 750 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 TMEM121Q9BTD3 319 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 FEZ2Q9UHY8 353 aaPredicted RBP20.29■□□□□ 0.84
SDC1-205ENST00000447124 CRLS1Q9UJA2 301 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 SPTA1P02549 2419 aa20.29■□□□□ 0.84
SDC1-205ENST00000447124 IGHV5-51A0A0C4DH38 117 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 GOLGA6L9A6NEM1 432 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 RASSF9O75901 435 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 ZIC2O95409 532 aaPredicted RBP20.28■□□□□ 0.84
SDC1-205ENST00000447124 POLBP06746 335 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 PRSS56P0CW18 603 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 PDE1BQ01064 536 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 ABHD18Q0P651 414 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 CAPRIN2Q6IMN6 1127 aaKnown RBP20.28■□□□□ 0.84
SDC1-205ENST00000447124 ARHGEF18Q6ZSZ5 1173 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 SNX20Q7Z614 316 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 CFAP206Q8IYR0 622 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 NXPE1Q8N323 547 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 TAB3Q8N5C8 712 aaPredicted RBP20.28■□□□□ 0.84
SDC1-205ENST00000447124 ELMO2Q96JJ3 720 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 SLC45A3Q96JT2 553 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 PPP1R2P1Q96PQ5 205 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 C19orf43Q9BQ61 176 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 IMP3Q9NV31 184 aaKnown RBP20.28■□□□□ 0.84
SDC1-205ENST00000447124 PIH1D1Q9NWS0 290 aaKnown RBP20.28■□□□□ 0.84
SDC1-205ENST00000447124 FAM8A1Q9UBU6 413 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 ACSL5Q9ULC5 683 aa20.28■□□□□ 0.84
SDC1-205ENST00000447124 BSNQ9UPA5 3926 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 NELFEP18615 380 aaKnown RBP20.27■□□□□ 0.84
SDC1-205ENST00000447124 F8A1P23610 371 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 MC4RP32245 332 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 CERS6Q6ZMG9 384 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 ATG4AQ8WYN0 398 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 ULK4Q96C45 1275 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 DCUN1D1Q96GG9 259 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 RMDN2Q96LZ7 410 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 C12orf66Q96MD2 445 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 COPS8Q99627 209 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 MAP3K3Q99759 626 aa20.27■□□□□ 0.84
SDC1-205ENST00000447124 GPN2Q9H9Y4 310 aaPredicted RBP20.27■□□□□ 0.84
SDC1-205ENST00000447124 BOD1L1Q8NFC6 3051 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 TRBV5-4A0A0C4DH59 114 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 ZNF189O75820 626 aaPredicted RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 PTMAP06454 111 aaKnown RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 FGF5P12034 268 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 ATP1B2P14415 290 aaPredicted RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 FOLR1P15328 257 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 ITGALP20701 1170 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 HADHAP40939 763 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 NFATC3Q12968 1075 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 IL11RAQ14626 422 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 ZNF658BQ4V348 819 aaPredicted RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 RNF10Q8N5U6 811 aaKnown RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms