RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HM13Q8TCT9 377 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 NAT14Q8WUY8 206 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 OSBPL9Q96SU4 736 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 TTC1Q99614 292 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 AP1M1Q9BXS5 423 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 DPH1Q9BZG8 443 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 SLC40A1Q9NP59 571 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 SMARCAL1Q9NZC9 954 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 PDP2Q9P2J9 529 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 TCAF1Q9Y4C2 921 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 PTPRQQ9UMZ3 2332 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 CFAP47Q6ZTR5 3102 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 BPTFQ12830 3046 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 ZFYVE26Q68DK2 2539 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 NVLO15381 856 aaKnown RBP14.88□□□□□ -0.03
LIMS3-201ENST00000437679 SGTAO43765 313 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 KRT14P02533 472 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 SLC35G4P0C7Q5 338 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 TYRP1P17643 537 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 ETV5P41161 510 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 VPS41P49754 854 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 PRAMEP78395 509 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 CDK16Q00536 496 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 GPR18Q14330 331 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 ITIH4Q14624 930 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 TRIP13Q15645 432 aaPredicted RBP14.88□□□□□ -0.03
LIMS3-201ENST00000437679 DBN1Q16643 649 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 TMEM164Q5U3C3 297 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 BROXQ5VW32 411 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 LYPLAL1Q5VWZ2 237 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 SPACA3Q8IXA5 215 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 PIANPQ8IYJ0 282 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 OR13J1Q8NGT2 312 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 OR6P1Q8NGX9 317 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 PEX13Q92968 403 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 USP7Q93009 1102 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 HDAC10Q969S8 669 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 CCM2Q9BSQ5 444 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 WWP1Q9H0M0 922 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 IMP3Q9NV31 184 aaKnown RBP14.88□□□□□ -0.03
LIMS3-201ENST00000437679 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.88□□□□□ -0.03
LIMS3-201ENST00000437679 BFARQ9NZS9 450 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 SLC2A6Q9UGQ3 507 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 SNX12Q9UMY4 172 aa14.88□□□□□ -0.03
LIMS3-201ENST00000437679 PRAMEF33A0A0G2JMD5 474 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GOLGA6L10A0A0M3HER8 536 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 C17orf113A0A1B0GUU1 675 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 OR51F1A6NGY5 319 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 A8MU76 341 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 QSOX1O00391 747 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 CES2O00748 559 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 KLK10O43240 276 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 AP2A2O94973 939 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GOT2P00505 430 aaKnown RBP14.87□□□□□ -0.03
LIMS3-201ENST00000437679 POLBP06746 335 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GSTM1P09488 218 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 MTHFD1P11586 935 aaKnown RBP14.87□□□□□ -0.03
LIMS3-201ENST00000437679 CCL4P13236 92 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 TPSB2P20231 275 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 FOXN2P32314 431 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 COILP38432 576 aaPredicted RBP14.87□□□□□ -0.03
LIMS3-201ENST00000437679 NSG1P42857 185 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 NPY2RP49146 381 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 SARNPP82979 210 aaKnown RBP14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GSTM4Q03013 218 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GPS1Q13098 491 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 GSE1Q14687 1217 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 TPSAB1Q15661 275 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 CYP1B1Q16678 543 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 PCID2Q5JVF3 399 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 TTC27Q6P3X3 843 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 ZNF449Q6P9G9 518 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 MICALCLQ6ZW33 695 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 OR4L1Q8NH43 312 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 ACTRT1Q8TDG2 376 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 COG1Q8WTW3 980 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 C12orf66Q96MD2 445 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 TAAR9Q96RI9 348 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 INSM2Q96T92 566 aaPredicted RBP14.87□□□□□ -0.03
LIMS3-201ENST00000437679 B3GNT4Q9C0J1 378 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 IL22Q9GZX6 179 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 KLHL3Q9UH77 587 aa14.87□□□□□ -0.03
LIMS3-201ENST00000437679 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 F8W8V4 182 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 PRAMEF10O60809 474 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 FGF3P11487 239 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 PPARGP37231 505 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 TERF1P54274 439 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 TLE3Q04726 772 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 ACVR1Q04771 509 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 KRT33BQ14525 404 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 PLCL1Q15111 1095 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 FASTKD1Q53R41 847 aaKnown RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 LRRC8BQ6P9F7 803 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 KLHL35Q6PF15 583 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 CCDC137Q6PK04 289 aaKnown RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 CERS6Q6ZMG9 384 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 ARHGAP22Q7Z5H3 698 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 FAM129CQ86XR2 697 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 CLDN19Q8N6F1 224 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms