RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 DTX3LQ8TDB6 740 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 KLHL6Q8WZ60 621 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 FERMT1Q9BQL6 677 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 WWP1Q9H0M0 922 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 SMOXQ9NWM0 555 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 EPHA6Q9UF33 1036 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 FKBPLQ9UIM3 349 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 KCTD3Q9Y597 815 aa16.72■□□□□ 0.27
TRIM39-209ENST00000428728 TNRC6AQ8NDV7 1962 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 SETXQ7Z333 2677 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 IGHV5-51A0A0C4DH38 117 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 RCCD1A6NED2 376 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 KCNN4O15554 427 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 MTHFD1P11586 935 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 NELFEP18615 380 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 NAP1L1P55209 391 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 EIF3EP60228 445 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 COPS2P61201 443 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 TUBB3Q13509 450 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 TAF1AQ15573 450 aaPredicted RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 SIDT2Q8NBJ9 832 aaKnown RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 C9orf43Q8TAL5 461 aaPredicted RBP16.71■□□□□ 0.27
TRIM39-209ENST00000428728 C12orf66Q96MD2 445 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 OSBPL8Q9BZF1 889 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 RAB33BQ9H082 229 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 ASB8Q9H765 288 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 TUBD1Q9UJT1 453 aa16.71■□□□□ 0.27
TRIM39-209ENST00000428728 ASH1LQ9NR48 2969 aaKnown RBP16.71■□□□□ 0.26
TRIM39-209ENST00000428728 C2orf81A6NN90 581 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 SPAG6O75602 509 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 SRP72O76094 671 aaKnown RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 STK10O94804 968 aaKnown RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 TIAF1O95411 115 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 RBP3P10745 1247 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 TMPRSS15P98073 1019 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 TLE1Q04724 770 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 PRPSAP1Q14558 356 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 SKIDA1Q1XH10 827 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 DNTTIP2Q5QJE6 756 aaKnown RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 ANKRD20A2Q5SQ80 823 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 ANKRD20A1Q5TYW2 823 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 ANKRD20A3Q5VUR7 823 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 AADACL2Q6P093 401 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 KLHL35Q6PF15 583 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 DARS2Q6PI48 645 aaKnown RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 PPP1R3BQ86XI6 285 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 CCDC110Q8TBZ0 833 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 APOBEC4Q8WW27 367 aaKnown RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 ZNF514Q96K75 400 aaPredicted RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 MAP3K3Q99759 626 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 ZNF71Q9NQZ8 489 aaPredicted RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 CRLS1Q9UJA2 301 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 PCDHA3Q9Y5H8 950 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 DNMT3AQ9Y6K1 912 aaPredicted RBP16.7■□□□□ 0.26
TRIM39-209ENST00000428728 DUSP10Q9Y6W6 482 aa16.7■□□□□ 0.26
TRIM39-209ENST00000428728 SPTBP11277 2137 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 CCL22O00626 93 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 KATNA1O75449 491 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 IPO7O95373 1038 aaKnown RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 SLC35G4P0C7Q5 338 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 EBLN1P0CF75 366 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 FGF5P12034 268 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 ADRA1AP35348 466 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 ARCN1P48444 511 aaKnown RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 ERV3-1Q14264 604 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 METRNLQ641Q3 311 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 CYB5D1Q6P9G0 228 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 RANBP10Q6VN20 620 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 CERS6Q6ZMG9 384 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 OR13C4Q8NGS5 318 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 UBXN4Q92575 508 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 INSM2Q96T92 566 aaPredicted RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 FAM96AQ9H5X1 160 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 PDE7BQ9NP56 450 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 AAR2Q9Y312 384 aaKnown RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 PCDHB3Q9Y5E6 796 aa16.69■□□□□ 0.26
TRIM39-209ENST00000428728 EPN1Q9Y6I3 576 aaPredicted RBP16.69■□□□□ 0.26
TRIM39-209ENST00000428728 FLNBO75369 2602 aaKnown RBP16.68■□□□□ 0.26
TRIM39-209ENST00000428728 UBA6A0AVT1 1052 aaPredicted RBP16.68■□□□□ 0.26
TRIM39-209ENST00000428728 OR5K3A6NET4 321 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 C5orf60A6NFR6 353 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 MGAT4DA6NG13 374 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 TLCD2A6NGC4 264 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 POLBP06746 335 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 FOLR1P15328 257 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 PTPN7P35236 360 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 ARL4DP49703 201 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 RWDD2BP57060 319 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 DNASE1L3Q13609 305 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 SPARCL1Q14515 664 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.68■□□□□ 0.26
TRIM39-209ENST00000428728 MICALCLQ6ZW33 695 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 OOSP2Q86WS3 158 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 LILRA3Q8N6C8 439 aaPredicted RBP16.68■□□□□ 0.26
TRIM39-209ENST00000428728 OR2L2Q8NH16 312 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 ALG3Q92685 438 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 DCUN1D1Q96GG9 259 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 SLC41A2Q96JW4 573 aa16.68■□□□□ 0.26
TRIM39-209ENST00000428728 RMDN2Q96LZ7 410 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms