RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 AP2M1Q96CW1 435 aa26.08■■□□□ 1.77
LDB1-202ENST00000425280 ERLEC1Q96DZ1 483 aa26.08■■□□□ 1.77
LDB1-202ENST00000425280 C19orf60Q96EN9 201 aa26.08■■□□□ 1.77
LDB1-202ENST00000425280 LENG8Q96PV6 779 aaPredicted RBP26.08■■□□□ 1.77
LDB1-202ENST00000425280 VPS35Q96QK1 796 aa26.08■■□□□ 1.77
LDB1-202ENST00000425280 COPG1Q9Y678 874 aaKnown RBP26.08■■□□□ 1.77
LDB1-202ENST00000425280 DENND4AQ7Z401 1863 aa26.08■■□□□ 1.77
LDB1-202ENST00000425280 LOC100653049A0A140TA62 436 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 SLC22A2O15244 555 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 KRT34O76011 436 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 MLYCDO95822 493 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 CD1EP15812 388 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 MSH3P20585 1137 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 CPOXP36551 454 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 MXRA7P84157 204 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 GBX1Q14549 363 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 PCBP2Q15366 365 aaKnown RBP eCLIP26.07■■□□□ 1.76
LDB1-202ENST00000425280 ZNF648Q5T619 568 aaPredicted RBP26.07■■□□□ 1.76
LDB1-202ENST00000425280 CHSY3Q70JA7 882 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 SYVN1Q86TM6 617 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 DTD2Q96FN9 168 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 FBRSL1Q9HCM7 1045 aaKnown RBP26.07■■□□□ 1.76
LDB1-202ENST00000425280 CLDND1Q9NY35 253 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 COQ6Q9Y2Z9 468 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 LRRK1Q38SD2 2015 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 APODP05090 189 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 PRDX3P30048 256 aaKnown RBP26.07■■□□□ 1.76
LDB1-202ENST00000425280 OR56A4Q8NGH8 313 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 TWIST2Q8WVJ9 160 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 C3orf30Q96M34 536 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 ZNF576Q9H609 170 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 ZNF225Q9UK10 706 aa26.07■■□□□ 1.76
LDB1-202ENST00000425280 PTBP2Q9UKA9 531 aaKnown RBP26.07■■□□□ 1.76
LDB1-202ENST00000425280 EIF3FO00303 357 aaPredicted RBP26.06■■□□□ 1.76
LDB1-202ENST00000425280 AP2A2O94973 939 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 GUCA1CO95843 209 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 ENO3P13929 434 aaPredicted RBP26.06■■□□□ 1.76
LDB1-202ENST00000425280 ADSLP30566 484 aaPredicted RBP26.06■■□□□ 1.76
LDB1-202ENST00000425280 RBBP7Q16576 425 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 PREPLQ4J6C6 727 aaPredicted RBP26.06■■□□□ 1.76
LDB1-202ENST00000425280 DSG4Q86SJ6 1040 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 GLYATL1Q969I3 302 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 BAIAP2L1Q9UHR4 511 aa26.06■■□□□ 1.76
LDB1-202ENST00000425280 TNPO3Q9Y5L0 923 aaKnown RBP26.06■■□□□ 1.76
LDB1-202ENST00000425280 PGM1P36871 562 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 MTHFRP42898 656 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 SOX9P48436 509 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 DNAL1Q4LDG9 190 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 LDLRAP1Q5SW96 308 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 LARP4Q71RC2 724 aaKnown RBP eCLIP26.05■■□□□ 1.762e-6■□□□□ 10.6
LDB1-202ENST00000425280 CYP2U1Q7Z449 544 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 RAVER1Q8IY67 606 aaKnown RBP26.05■■□□□ 1.76
LDB1-202ENST00000425280 DYRK4Q9NR20 520 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 PIP5K1BO14986 540 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 TAPBPO15533 448 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 ESRRBO95718 433 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 VCLP18206 1134 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 PSMD8P48556 350 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 HSPA14Q0VDF9 509 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 ERN2Q76MJ5 926 aaKnown RBP26.05■■□□□ 1.76
LDB1-202ENST00000425280 MMADHCQ9H3L0 296 aaPredicted RBP26.05■■□□□ 1.76
LDB1-202ENST00000425280 TUBB1Q9H4B7 451 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 PTGDR2Q9Y5Y4 395 aa26.05■■□□□ 1.76
LDB1-202ENST00000425280 ATP6AP2A0A1C7CYW4 349 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 C1QTNF3-AMACRE9PGA6 284 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 ATP6AP2O75787 350 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 LTBRP36941 435 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 ZNF382Q96SR6 550 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 RDH14Q9HBH5 336 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 STON1Q9Y6Q2 735 aa26.04■■□□□ 1.76
LDB1-202ENST00000425280 NUAK1O60285 661 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 SLC25A3Q00325 362 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 SNCBQ16143 134 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 TMEM52BQ4KMG9 183 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 PLEKHS1Q5SXH7 462 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 VRK3Q8IV63 474 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 BEND7Q8N7W2 519 aaPredicted RBP26.03■■□□□ 1.76
LDB1-202ENST00000425280 EGFL8Q99944 293 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 OR2AG2A6NM03 316 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 UBDO15205 165 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 MMP20O60882 483 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 CRCPO75575 148 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 RECQL5O94762 991 aaPredicted RBP26.03■■□□□ 1.76
LDB1-202ENST00000425280 THRAP10827 490 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 C6P13671 934 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 BOP1Q14137 746 aaKnown RBP26.03■■□□□ 1.76
LDB1-202ENST00000425280 COL13A1Q5TAT6 717 aaPredicted RBP26.03■■□□□ 1.76
LDB1-202ENST00000425280 GPRIN3Q6ZVF9 776 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 NUDT18Q6ZVK8 323 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 GOLGA7Q7Z5G4 137 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 SNX32Q86XE0 403 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 RASGEF1AQ8N9B8 481 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 RHBDF1Q96CC6 855 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 MSLNLQ96KJ4 702 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 HDAC8Q9BY41 377 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 TIMM22Q9Y584 194 aa26.03■■□□□ 1.76
LDB1-202ENST00000425280 KPNA5O15131 536 aa26.02■■□□□ 1.76
LDB1-202ENST00000425280 P2RY2P41231 377 aa26.02■■□□□ 1.76
LDB1-202ENST00000425280 WASP42768 502 aa26.02■■□□□ 1.76
LDB1-202ENST00000425280 HSPA7P48741 367 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms