RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 LRRC53A6NM62 1247 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 KLHL41O60662 606 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 POP7O75817 140 aaKnown RBP16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 MSL3P1P0C860 447 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 SPTBP11277 2137 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 MX2P20592 715 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 HADHAP40939 763 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 SLC10A2Q12908 348 aaPredicted RBP16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 ABRQ12979 859 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 RAPSNQ13702 412 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 GTF2H3Q13889 308 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 ATP13A5Q4VNC0 1218 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 ZNF789Q5FWF6 425 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 LYPLAL1Q5VWZ2 237 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 SP5Q6BEB4 398 aaPredicted RBP16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 OOSP2Q86WS3 158 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 RAB43Q86YS6 212 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 SYTL1Q8IYJ3 562 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 DTX3LQ8TDB6 740 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 UBE2Q2Q8WVN8 375 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 INPP5DQ92835 1189 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 CLIP3Q96DZ5 547 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 IP6K3Q96PC2 410 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 GPR63Q9BZJ6 419 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 ZNF552Q9H707 407 aaPredicted RBP16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 IP6K2Q9UHH9 426 aa16.31■□□□□ 0.2
CHCHD3-202ENST00000423635 PIKFYVEQ9Y2I7 2098 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 KRT38O76015 456 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 PIRTP0C851 137 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 MTHFD1P11586 935 aaKnown RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 CA5AP35218 305 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 KPNA2P52292 529 aaKnown RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 MYBPC3Q14896 1274 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 NCF4Q15080 339 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 ZRSR2Q15696 482 aaKnown RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 METRNLQ641Q3 311 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 FAM83HQ6ZRV2 1179 aaPredicted RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 Q6ZS92 163 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 FER1L6-AS2Q96M78 137 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 TTC25Q96NG3 672 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 SRPK1Q96SB4 655 aaKnown RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 DPH2Q9BQC3 489 aaPredicted RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 DHRS4Q9BTZ2 278 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 ILKAPQ9H0C8 392 aaPredicted RBP16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 FANCEQ9HB96 536 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 PSMD13Q9UNM6 376 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 NTNG1Q9Y2I2 539 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 PCDHGA10Q9Y5H3 936 aa16.3■□□□□ 0.2
CHCHD3-202ENST00000423635 DIDO1Q9BTC0 2240 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 CROCCQ5TZA2 2017 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 IPO13O94829 963 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 LCA5LO95447 670 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ALPPP05187 535 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 CDK11BP21127 795 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 GRNP28799 593 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 HNRNPH3P31942 346 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 SOX8P57073 446 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 IFI35P80217 286 aaPredicted RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 GBE1Q04446 702 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ADCY2Q08462 1091 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 SSPNQ14714 243 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 NAA30Q147X3 362 aaPredicted RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ASIC2Q16515 512 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ATP13A4Q4VNC1 1196 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 RASGEF1AQ8N9B8 481 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 CCNYQ8ND76 341 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 TADA1Q96BN2 335 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 FAF2Q96CS3 445 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 IMP4Q96G21 291 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 BTBD6Q96KE9 485 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 PPM1MQ96MI6 270 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ZNF670Q9BS34 389 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ACTR5Q9H9F9 607 aaPredicted RBP16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 AGPAT4Q9NRZ5 378 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 C1GALT1Q9NS00 363 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 SOHLH2Q9NX45 425 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 SLC24A2Q9UI40 661 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 PDZD2O15018 2839 aa16.29■□□□□ 0.2
CHCHD3-202ENST00000423635 ARHGAP10A1A4S6 786 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 OR6C74A6NCV1 312 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 F5H423 210 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 KCNK1O00180 336 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 AURKAO14965 403 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 LRRTM2O43300 516 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 KLF7O75840 302 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 IGHEP01854 428 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 HMGCLP35914 325 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 GLRBP48167 497 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 PER3P56645 1201 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 PPIDQ08752 370 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 ZBTB17Q13105 803 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 NFE2L1Q14494 772 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 PDK2Q15119 407 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 KYNUQ16719 465 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 HADHQ16836 314 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 DCAF10Q5QP82 559 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 ZNF385CQ66K41 422 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 E4F1Q66K89 784 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 ARMC6Q6NXE6 501 aa16.28■□□□□ 0.2
CHCHD3-202ENST00000423635 FBXO38Q6PIJ6 1188 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms