RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 WDCPQ9H6R7 721 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ARNT2Q9HBZ2 717 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ACOT13Q9NPJ3 140 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 TMEM45AQ9NWC5 275 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 DKK3Q9UBP4 350 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZNF225Q9UK10 706 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CRYL1Q9Y2S2 319 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 PCDHB14Q9Y5E9 798 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 COL1A2P08123 1366 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 CCL22O00626 93 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 SNX2O60749 519 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 USP2O75604 605 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 ZNF37AP17032 561 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 ARSDP51689 593 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CHRNEQ04844 493 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 PRKG2Q13237 762 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 TRIP4Q15650 581 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 AGAP6Q5VW22 663 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CCBE1Q6UXH8 406 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 CTU1Q7Z7A3 348 aaKnown RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 METTL4Q8N3J2 472 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 AADATQ8N5Z0 425 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 IL17RDQ8NFM7 739 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 OR6F1Q8NGZ6 308 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 OR5K1Q8NHB7 308 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 FIG4Q92562 907 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 PROX1Q92786 737 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 AGAP4Q96P64 663 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 GAD1Q99259 594 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 NUSAP1Q9BXS6 441 aaKnown RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 MIR1-1HGQ9H1L0 117 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 DCSTAMPQ9H295 470 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 MFSD1Q9H3U5 465 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ACTR8Q9H981 624 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 AASSQ9UDR5 926 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ZNF112Q9UJU3 913 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 TPRKBQ9Y3C4 175 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 EFCAB9A8MZ26 197 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ARNTLO00327 626 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 GNGT2O14610 69 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 KMOO15229 486 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ONECUT3O60422 494 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 PAPSS2O95340 614 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 FADS2O95864 444 aaKnown RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 SLC4A1P02730 911 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 FTH1P02794 183 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 HOXD8P13378 290 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 TRPC1P48995 793 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 SUOXP51687 545 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CLCNKBP51801 687 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 WNT3AP56704 352 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 MAP3K7CLP57077 242 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CXCR4P61073 352 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 PCSK7Q16549 785 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 DCAF4L1Q3SXM0 396 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 KDELC1Q6UW63 502 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 SCIMPQ6UWF3 145 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ALKAL1Q6UXT8 129 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 GDPD3Q7L5L3 318 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CHPFQ8IZ52 775 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 EID3Q8N140 333 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 CELF2-AS1Q8N7Q2 184 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ZNF548Q8NEK5 533 aaPredicted RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 CLIP3Q96DZ5 547 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 PPP1R2P1Q96PQ5 205 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 SNX18Q96RF0 628 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 ATP13A1Q9HD20 1204 aa10.56□□□□□ -0.72
USP54-204ENST00000422491 TMA7Q9Y2S6 64 aaKnown RBP10.56□□□□□ -0.72
USP54-204ENST00000422491 OR51F1A6NGY5 319 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 CRCPO75575 148 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 RPS17P08708 135 aaKnown RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 CD36P16671 472 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 PRKCAP17252 672 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 PFKLP17858 780 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 MAGP20916 626 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 GTF2E2P29084 291 aaKnown RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 MVKQ03426 396 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 GBX1Q14549 363 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 RFX4Q33E94 735 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 PLEKHG6Q3KR16 790 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 FBXO48Q5FWF7 155 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 C6orf136Q5SQH8 315 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 PNCKQ6P2M8 343 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 GPRIN1Q7Z2K8 1008 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 SYVN1Q86TM6 617 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 CCDC103Q8IW40 242 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 OR8J3Q8NGG0 315 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 PYCR2Q96C36 320 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ACTL8Q9H568 366 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 TFB2MQ9H5Q4 396 aaKnown RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 ZBTB20Q9HC78 741 aaPredicted RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 RBM22Q9NW64 420 aaKnown RBP eCLIP10.55□□□□□ -0.72
USP54-204ENST00000422491 ERAP1Q9NZ08 941 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 LIMD1Q9UGP4 676 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ADGRE2Q9UHX3 823 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 OR2A25A4D2G3 310 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 H0Y626 953 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 HAT1O14929 419 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 MITFO75030 526 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms