RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CHRNB1P11230 501 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 AZGP1P25311 298 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ACVRL1P37023 503 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CASP9P55211 416 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 SLC15A3Q8IY34 581 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 SIDT2Q8NBJ9 832 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 MCFD2Q8NI22 146 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 SERPINB11Q96P15 392 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 KIFC1Q9BW19 673 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ZYG11BQ9C0D3 744 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CLPBQ9H078 707 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 INTS7Q9NVH2 962 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CCDC59Q9P031 241 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 EIF3LQ9Y262 564 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 MICAL3Q7RTP6 2002 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 NME4O00746 187 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CYBBP04839 570 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 SMIM18P0DKX4 95 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 PBX3P40426 434 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 GDF5P43026 501 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 IDH2P48735 452 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 SH3BP2P78314 561 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 TNK2Q07912 1038 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ERICH5Q6P6B1 374 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CARNMT1Q8N4J0 409 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ASCC1Q8N9N2 400 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 BEX2Q9BXY8 128 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 WDR12Q9GZL7 423 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 TP63Q9H3D4 680 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 DIABLOQ9NR28 239 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ADPRHL2Q9NX46 363 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ZDHHC7Q9NXF8 308 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 EMC3Q9P0I2 261 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 AASSQ9UDR5 926 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ARL5CA6NH57 179 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 F8W810 466 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 H3BNH8 94 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 STMND1H3BQB6 276 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 SNAP91O60641 907 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 IDO1P14902 403 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 HSPA7P48741 367 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ACADVLP49748 655 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 CDK9P50750 372 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 TAB1Q15750 504 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PRMT9Q6P2P2 845 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF621Q6ZSS3 439 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 CMTR2Q8IYT2 770 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 FCRL5Q96RD9 977 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 HOPXQ9BPY8 73 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.79□□□□□ -0.524e-6■□□□□ 9.4
HMGB1-206ENST00000405805 SLAMF8Q9P0V8 285 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 SUCOQ9UBS9 1254 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PCDHB9Q9Y5E1 797 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 NRXN2Q9P2S2 1712 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PIRO00625 290 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF195O14628 629 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 CAPN3P20807 821 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 IMPDH1P20839 514 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MAGEA6P43360 314 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MEP1AQ16819 746 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 FAM110CQ1W6H9 321 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ALFQ53S48 1182 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ERMP1Q7Z2K6 904 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 HS3ST5Q8IZT8 346 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 OR2T12Q8NG77 320 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 TNFRSF12AQ9NP84 129 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PLK2Q9NYY3 685 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 POLG2Q9UHN1 485 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 RNF11Q9Y3C5 154 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 DNAJC15Q9Y5T4 150 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MYO9BQ13459 2157 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 G3V2T6 193 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 NUPL2O15504 423 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 CDK14O94921 469 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 C1QAP02745 245 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 HK2P52789 917 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF177Q13360 481 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PMS2P3Q13401 168 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 FAM187BQ17R55 369 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 AURKBQ96GD4 344 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MSANTD3Q96H12 275 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ITCHQ96J02 903 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ATP13A3Q9H7F0 1226 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 VPS28Q9UK41 221 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PRKAB1Q9Y478 270 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 SIPA1L1O43166 1804 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 TMEM221A6NGB7 291 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ICMTO60725 284 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 FAM20BO75063 409 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 RHOCP08134 193 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 PRDX3P30048 256 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 RPL35P42766 123 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 MAPK12P53778 367 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 KLHL12Q53G59 568 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 KIAA0930Q6ICG6 404 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 DET1Q7L5Y6 550 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF598Q86UK7 904 aaKnown RBP11.79□□□□□ -0.52
HMGB1-206ENST00000405805 DTX3Q8N9I9 347 aa11.79□□□□□ -0.52
HMGB1-206ENST00000405805 CENPIQ92674 756 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms