RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SOX10P56693 466 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PTENP60484 403 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TFAP4Q01664 338 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MC2RQ01718 297 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 FPGSQ05932 587 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SRSF4Q08170 494 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF844Q08AG5 666 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LPIN1Q14693 890 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LY6KQ17RY6 165 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 VWC2Q2TAL6 325 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 FAM153CQ494X1 144 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 KCTD21Q4G0X4 260 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PREPLQ4J6C6 727 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 FILIP1LQ4L180 1135 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LRRC23Q53EV4 343 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SOWAHCQ53LP3 525 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TAF1BQ53T94 588 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RNASEH2BQ5TBB1 312 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM198Q66K66 360 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ARHGAP17Q68EM7 881 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RAET1GQ6H3X3 334 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OR6B2Q6IFH4 312 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TEX38Q6PEX7 206 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GPAT4Q86UL3 456 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NUDT13Q86X67 352 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF573Q86YE8 665 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC13Q8IYE1 715 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PM20D2Q8IYS1 436 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 IZUMO1Q8IYV9 350 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 L3MBTL4Q8NA19 623 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CCNYQ8ND76 341 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC24A4Q8NFF2 622 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OR52L2PQ8NGH6 319 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 HEXDCQ8WVB3 486 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OSCP1Q8WVF1 389 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SNRNP40Q96DI7 357 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC51Q96ER9 411 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NSMCE2Q96MF7 247 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF577Q9BSK1 485 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TPPP3Q9BW30 176 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 C1QTNF5Q9BXJ0 243 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC7A5P2Q9GIP4 190 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 S1PR5Q9H228 398 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLCO5A1Q9H2Y9 848 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RMND5AQ9H871 391 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LMAN1LQ9HAT1 526 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PALMDQ9NP74 551 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PRMT7Q9NVM4 692 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TRIM10Q9UDY6 481 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RCOR1Q9UKL0 485 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PSME2Q9UL46 239 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SNX6Q9UNH7 406 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 AAR2Q9Y312 384 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MROH5Q6ZUA9 1318 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 ARHGEF11O15085 1522 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 RIMBP3CA6NJZ7 1639 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 RIMBP3BA6NNM3 1639 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 RIMBP3Q9UFD9 1639 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 FAM237AA0A1B0GTK4 181 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 TRIM49BA6NDI0 452 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SDR42E2A6NKP2 422 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 CGB1A6NKQ9 187 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 NPIPB11E5RHQ5 1161 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 MPPED1O15442 326 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 OR6B1O95007 311 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 VNN2O95498 520 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 CYP2A7P20853 494 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 NR2F2P24468 414 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SERPINB6P35237 376 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 ARHGAP25P42331 645 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 RPS7P62081 194 aaKnown RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 PTPRCAPQ14761 206 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 GPR162Q16538 588 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 MCMDC2Q4G0Z9 681 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC122Q5T0U0 273 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 RBM20Q5T481 1227 aaKnown RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 C1orf185Q5T7R7 199 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 AADACL4Q5VUY2 407 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 DHRS7BQ6IAN0 325 aaPredicted RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM88Q6PEY1 159 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 MTERF4Q7Z6M4 381 aaKnown RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF595Q8IYB9 648 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 HACE1Q8IYU2 909 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 GHDCQ8N2G8 530 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 DCLK2Q8N568 766 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 ELP5Q8TE02 316 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 IP6K1Q92551 441 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 NECTIN4Q96NY8 510 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 KLHL5Q96PQ7 755 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 NAP1L3Q99457 506 aaPredicted RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SEPT5Q99719 369 aaPredicted RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 ELOVL1Q9BW60 279 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SPATC1LQ9H0A9 340 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 CPNE5Q9HCH3 593 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 GDAP2Q9NXN4 497 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 CTTNBP2NLQ9P2B4 639 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 IPO11Q9UI26 975 aaKnown RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SLC25A13Q9UJS0 675 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms