RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CD180Q99467 661 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FAM118BQ9BPY3 351 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ADAM33Q9BZ11 813 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ULBP3Q9BZM4 244 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 XPR1Q9UBH6 696 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 OPTCQ9UBM4 332 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MUTYHQ9UIF7 546 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC9A8Q9Y2E8 581 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PCDHB1Q9Y5F3 818 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 WNT6Q9Y6F9 365 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ROBO3Q96MS0 1386 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 DIP2BQ9P265 1576 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KCNU1A8MYU2 1149 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 POC1B-GALNT4F8VUJ3 575 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PFDN1O60925 122 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SERPINB7O75635 380 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GATBO75879 557 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 JCHAINP01591 159 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCDC159P0C7I6 412 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TPBGLP0DKB5 382 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF823P16415 610 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF3P17036 446 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CPN2P22792 545 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PTX3P26022 381 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 CDH5P33151 784 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCZ1BP86790 482 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCZ1P86791 482 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.05□□□□□ -1.76
USH2A-202ENST00000366942 TRA2AQ13595 282 aaKnown RBP eCLIP4.05□□□□□ -1.76
USH2A-202ENST00000366942 TERF2Q15554 542 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCL14Q16627 93 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RSPO4Q2I0M5 234 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 MSS51Q4VC12 460 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 AGAP7PQ5VUJ5 663 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CDC73Q6P1J9 531 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TMEM53Q6P2H8 277 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 BORAQ6PGQ7 559 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KCTD8Q6ZWB6 473 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NEK10Q6ZWH5 1172 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FGD2Q7Z6J4 655 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PM20D2Q8IYS1 436 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SMYD1Q8NB12 490 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 UBA3Q8TBC4 463 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TCTN2Q96GX1 697 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 AGAP4Q96P64 663 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 QKIQ96PU8 341 aaKnown RBP eCLIP4.05□□□□□ -1.76
USH2A-202ENST00000366942 PDE11AQ9HCR9 933 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 Q9N2J8 555 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MRPS30Q9NP92 439 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCNB1IP1Q9NPC3 277 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 HRASLS2Q9NWW9 162 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF624Q9P2J8 865 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 RBPJLQ9UBG7 517 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SNX12Q9UMY4 172 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PLAGL2Q9UPG8 496 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZCCHC11Q5TAX3 1644 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ANXA2P2A6NMY6 339 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 E9PBE3 544 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KCNN4O15554 427 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ERAL1O75616 437 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 AHSA1O95433 338 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 LATS1O95835 1130 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MC4RP32245 332 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NUDT2P50583 147 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KCNK10P57789 538 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MYL6P60660 151 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ESRRGP62508 458 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CDH17Q12864 832 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RAB33AQ14088 237 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 DPYSQ14117 519 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NR1D2Q14995 579 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RAB35Q15286 201 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 DDR2Q16832 855 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 LACTB2Q53H82 288 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 MANEALQ5VSG8 457 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF571Q7Z3V5 609 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 MFSD6LQ8IWD5 586 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZDHHC14Q8IZN3 488 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 OR14L1PQ8NHC6 308 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 BCL7CQ8WUZ0 217 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC5A11Q8WWX8 675 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ANKS1AQ92625 1134 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 COPS5Q92905 334 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TMEM68Q96MH6 324 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RHNO1Q9BSD3 238 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 BEX2Q9BXY8 128 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GOLPH3LQ9H4A5 285 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FAM86C1Q9NVL1 165 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FNIP2Q9P278 1114 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MCM8Q9UJA3 840 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PTBP2Q9UKA9 531 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 FZD10Q9ULW2 581 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CORO2BQ9UQ03 480 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KCTD3Q9Y597 815 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CYP3A7-CYP3A51PA0A087WV96 503 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 NPIPA2E9PIF3 369 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 NPIPA3F8WFD2 350 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ARPC2O15144 300 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms