RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CASP7P55210 303 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 C1QBPQ07021 282 aaKnown RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 GDPD4Q6W3E5 623 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 BARD1Q99728 777 aaKnown RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 TAPBPLQ9BX59 468 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 C3orf14Q9HBI5 128 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 CLN6Q9NWW5 311 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 PDP1Q9P0J1 537 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 HSD3B2P26439 372 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 OTX2P32243 289 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SLC10A6Q3KNW5 377 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 CRTC2Q53ET0 693 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 VHLLQ6RSH7 139 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 FAM220AQ7Z4H9 259 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ENKURQ8TC29 256 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 HTRA1Q92743 480 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SLC47A1Q96FL8 570 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ZBTB20Q9HC78 741 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 FBXL3Q9UKT7 428 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 STARD13Q9Y3M8 1113 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SAMD9LQ8IVG5 1584 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 C2orf92A0A1B0GVN3 265 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF208O43345 1280 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SSNA1O43805 119 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 EN2P19622 333 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 VIPR2P41587 438 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 STK19P49842 368 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF143P52747 638 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 GTF2BQ00403 316 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 CD47Q08722 323 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ZDHHC17Q8IUH5 632 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ABHD5Q8WTS1 349 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SNX33Q8WV41 574 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 TFAP2BQ92481 460 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 UROC1Q96N76 676 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 CDK5RAP1Q96SZ6 601 aaKnown RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 APOBEC3GQ9HC16 384 aaKnown RBP7.27□□□□□ -1.25
VPS13A-202ENST00000357409 ERVK-18Q9QC07 812 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 SLC2A6Q9UGQ3 507 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 APOC4-APOC2K7ER74 178 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 TRBC1P01850 177 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 APOC2P02655 101 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 GNA12Q03113 381 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 TEAD4Q15561 434 aa7.27□□□□□ -1.25
VPS13A-202ENST00000357409 MED14O60244 1454 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MYADML2A6NDP7 307 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 FSCN2O14926 492 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CA12O43570 354 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ITGB1P05556 798 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 LILRA4P59901 499 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 BNIP3Q12983 259 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MAD2L1Q13257 205 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 LAPTM5Q13571 262 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 EXOC3L2Q2M3D2 409 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PIM3Q86V86 326 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 EXOC3L1Q86VI1 746 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PHOSPHO1Q8TCT1 267 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 DQX1Q8TE96 717 aaKnown RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 HERC2P3Q9BVR0 1158 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MTHFRP42898 656 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 SLC11A1P49279 550 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 TTPAP49638 278 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ENTPD1P49961 510 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 NR1D2Q14995 579 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CHRNA6Q15825 494 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM119Q4V9L6 283 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 TXNRD3NBQ6F5E7 133 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CCDC116Q8IYX3 515 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ARL10Q8N8L6 244 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PIK3C3Q8NEB9 887 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 DNAAF1Q8NEP3 725 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ADAMTS19Q8TE59 1207 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 KLHL6Q8WZ60 621 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 OVCA2Q8WZ82 227 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CSPG4P5Q96PW8 444 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 AIF1LQ9BQI0 150 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PCDHB3Q9Y5E6 796 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 GCC2Q8IWJ2 1684 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 BLOC1S5-TXNDC5H3BN57 136 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 XKRYO14609 159 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 DUSP11O75319 330 aaKnown RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 LRIG2O94898 1065 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 HSPA13P48723 471 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 SULT1C3Q6IMI6 304 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PIWIL4Q7Z3Z4 852 aaKnown RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 FAR1Q8WVX9 515 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 TLR10Q9BXR5 811 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MRPS30Q9NP92 439 aaKnown RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MARK1Q9P0L2 795 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 TRAF6Q9Y4K3 522 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 PMF1-BGLAPU3KQ54 211 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 SHANK2Q9UPX8 1470 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CDK12Q9NYV4 1490 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-202ENST00000357409 MUSKO15146 869 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ENTPD5O75356 428 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CREB1P16220 341 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 CCND1P24385 295 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 SLC6A9P48067 706 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 BST1Q10588 318 aa7.26□□□□□ -1.25
VPS13A-202ENST00000357409 ELOAQ14241 798 aaKnown RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms