RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PRKG2Q13237 762 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NFATC2Q13469 925 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NANOGP8Q6NSW7 305 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 RETSATQ6NUM9 610 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 Q6ZNB5 142 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 ZFAND4Q86XD8 727 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 PTRH1Q86Y79 214 aaKnown RBP21.47■■□□□ 1.03
SHMT1-202ENST00000352886 EPHX4Q8IUS5 362 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 RBFAQ8N0V3 343 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 CBR4Q8N4T8 237 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 GRIN3AQ8TCU5 1115 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 DDI1Q8WTU0 396 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 RPL10LQ96L21 214 aaKnown RBP21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NANOGQ9H9S0 305 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 VCX3AQ9NNX9 186 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 PRSS21Q9Y6M0 314 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 PDLIM1O00151 329 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 VILLO15195 856 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 TRBC1P01850 177 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 HSPA7P48741 367 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 SLC2A7Q6PXP3 512 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 SNX20Q7Z614 316 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 C17orf80Q9BSJ5 609 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 ANKRD60Q9BZ19 345 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 MUC13Q9H3R2 512 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 IPPKQ9H8X2 491 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 PADI4Q9UM07 663 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 INSL5Q9Y5Q6 135 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 ZNF106Q9H2Y7 1883 aaKnown RBP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 SLC25A14O95258 325 aaPredicted RBP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 TRIM16O95361 564 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 CLDN7O95471 211 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 GPIP06744 558 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 RPS3P23396 243 aaKnown RBP eCLIP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 PLOD1Q02809 727 aaPredicted RBP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 RAB33AQ14088 237 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 NR6A1Q15406 480 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 DEFB115Q30KQ5 88 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 MYLK3Q32MK0 819 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 INTS11Q5TA45 600 aaKnown RBP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 CMTR2Q8IYT2 770 aaKnown RBP21.46■■□□□ 1.03
SHMT1-202ENST00000352886 PDPRQ8NCN5 879 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 IL26Q9NPH9 171 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 HEBP1Q9NRV9 189 aa21.46■■□□□ 1.03
SHMT1-202ENST00000352886 CCDC160A6NGH7 325 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 PLOD2O00469 737 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 LSM1O15116 133 aaKnown RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 H6PDO95479 791 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 G6PDP11413 515 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 ITGALP20701 1170 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 UGT1A1P22309 533 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 UGT1A4P22310 534 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 UGT1A3P35503 534 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 UGT1A5P35504 534 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 RGS4P49798 205 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 EEFSECP57772 596 aaKnown RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 COL4A6Q14031 1691 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 RBBP5Q15291 538 aaKnown RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 REM2Q8IYK8 340 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 ZMYM5Q9UJ78 669 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 USP22Q9UPT9 525 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 A8MX80 341 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 OTCP00480 354 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 HNF1BP35680 557 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 NR1H2P55055 460 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 ABRAXAS2Q15018 415 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 TMCO2Q7Z6W1 182 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 TRPV3Q8NET8 790 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 TSPAN14Q8NG11 270 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 APOL5Q9BWW9 433 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 FAM126AQ9BYI3 521 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 PIF1Q9H611 641 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 CAAP1Q9H8G2 361 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 PNPLA3Q9NST1 481 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 ELOVL2Q9NXB9 296 aa21.45■■□□□ 1.02
SHMT1-202ENST00000352886 PTBP2Q9UKA9 531 aaKnown RBP21.45■■□□□ 1.02
SHMT1-202ENST00000352886 TCRBV5S2A0A599 114 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 HMOX2P30519 316 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 CCT8P50990 548 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 EMX2Q04743 252 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 TRAF3Q13114 568 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 LSAMPQ13449 338 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.44■■□□□ 1.02
SHMT1-202ENST00000352886 CYP20A1Q6UW02 462 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 MILR1Q7Z6M3 343 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 PACRGLQ8N7B6 248 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 ZFP28Q8NHY6 868 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 TFAP2CQ92754 450 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 CENPNQ96H22 339 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-202ENST00000352886 RBM38Q9H0Z9 239 aaKnown RBP21.44■■□□□ 1.02
SHMT1-202ENST00000352886 TNKS2Q9H2K2 1166 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 IL21Q9HBE4 155 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 OLAHQ9NV23 265 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 TMEM45AQ9NWC5 275 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 OARD1Q9Y530 152 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-202ENST00000352886 TAPBPO15533 448 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 OLFM2O95897 454 aa21.44■■□□□ 1.02
SHMT1-202ENST00000352886 ENO2P09104 434 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-202ENST00000352886 BPIP17213 487 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms