RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TCP10LQ8TDR4 215 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 CENPTQ96BT3 561 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 ATP6V1G3Q96LB4 118 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 PPP1R36Q96LQ0 422 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 HGH1Q9BTY7 390 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 FBRSQ9HAH7 460 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 TMBIM4Q9HC24 238 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 MRM3Q9HC36 420 aaKnown RBP9.06□□□□□ -0.96
USP4-202ENST00000351842 PRDM8Q9NQV8 689 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 KLF15Q9UIH9 416 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 GNPTGQ9UJJ9 305 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 ACOT9Q9Y305 439 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 A0A1W2PPC4 97 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 BCAT2O15382 392 aaPredicted RBP9.06□□□□□ -0.96
USP4-202ENST00000351842 TSHRP16473 764 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 JUNDP17535 347 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 RAB10P61026 200 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 TSNQ15631 228 aaKnown RBP9.06□□□□□ -0.96
USP4-202ENST00000351842 DEFB133Q30KQ1 61 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 UAP1L1Q3KQV9 507 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 N4BP2L1Q5TBK1 243 aaPredicted RBP9.06□□□□□ -0.96
USP4-202ENST00000351842 FRA10AC1Q70Z53 315 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 RELL1Q8IUW5 271 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 C10orf67Q8IYJ2 551 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 PHACTR4Q8IZ21 702 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 CCNYL1Q8N7R7 359 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 FAM46DQ8NEK8 389 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 LMX1AQ8TE12 382 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 PYCR2Q96C36 320 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 TM9SF3Q9HD45 589 aa9.06□□□□□ -0.96
USP4-202ENST00000351842 MYO1CO00159 1063 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 CASC3O15234 703 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 WNT1P04628 370 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 TFEBP19484 476 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 CD38P28907 300 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 LEPRP48357 1165 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 SERPINB8P50452 374 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 VASPP50552 380 aaPredicted RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 GUCY1A3Q02108 690 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SLC14A2Q15849 920 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 C18orf21Q32NC0 220 aaPredicted RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 GPR33Q49SQ1 333 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 FAM83HQ6ZRV2 1179 aaPredicted RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 ZNF547Q8IVP9 402 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 PPFIBP2Q8ND30 876 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 OR56A4Q8NGH8 313 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 HEXDCQ8WVB3 486 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SRPK1Q96SB4 655 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 AARSD1Q9BTE6 412 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 ARRDC1-AS1Q9H2J1 176 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 TRIM39Q9HCM9 518 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 TMEM216Q9P0N5 145 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 ASF1AQ9Y294 204 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 RRP15Q9Y3B9 282 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 MUC22E2RYF6 1773 aaPredicted RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 METTL12A8MUP2 240 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SUPT3HB4E1H0 165 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 PRAMEF26H0Y7S4 382 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 H3BMM5 538 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SUPT3HO75486 399 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 RFPL1O75677 317 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SLC35E2BP0CK96 405 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 NR1D1P20393 614 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 OXTRP30559 389 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 BDKRB1P46663 353 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 ATXN3P54252 364 aaPredicted RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 CORO7P57737 925 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 MPP2Q14168 576 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 HHATQ5VTY9 493 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 TRABD2AQ86V40 505 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 AMZ2Q86W34 360 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 FAM20CQ8IXL6 584 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SPOCK2Q92563 424 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 ATG10Q9H0Y0 220 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 XPR1Q9UBH6 696 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SLC24A2Q9UI40 661 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 COL4A2P08572 1712 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 LAMA5O15230 3695 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 PRSS38A1L453 326 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 LRRC14BA6NHZ5 514 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 AP1G1O43747 822 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 PYGLP06737 847 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 GFAPP14136 432 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 OGNP20774 298 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 CTBSQ01459 385 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 ACVR1Q04771 509 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 DLG1Q12959 904 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 BNIP3Q12983 259 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 CCSMST1Q4G0I0 132 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 TRIM61Q5EBN2 209 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 LDLRAP1Q5SW96 308 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 CERS6Q6ZMG9 384 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 FAM47EQ6ZV65 393 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 CYP2U1Q7Z449 544 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 SGSM3Q96HU1 749 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 IL17FQ96PD4 163 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 ZCCHC2Q9C0B9 1178 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 KLHL25Q9H0H3 589 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 XKR8Q9H6D3 395 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 IL21RQ9HBE5 538 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms