RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PARP16Q8N5Y8 322 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 DPP10Q8N608 796 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 HCAR2Q8TDS4 363 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SNX18Q96RF0 628 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ACOX2Q99424 681 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 BARD1Q99728 777 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 KAT8Q9H7Z6 458 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 PLSCR3Q9NRY6 295 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 COMMD8Q9NX08 183 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 VNN3Q9NY84 501 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 OR12D3Q9UGF7 316 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZNF225Q9UK10 706 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZNF221Q9UK13 617 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 MN1Q10571 1320 aaPredicted RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 DICER1Q9UPY3 1922 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 LTBP4Q8N2S1 1624 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 LOC105371267A0A1B0GV96 52 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 FAM234BA2RU67 622 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SAGE2PA6NJ88 616 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 A8MV72 311 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 HAT1O14929 419 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DSCR3O14972 297 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ANXA9O76027 345 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CYP11A1P05108 521 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 HLA-DQB2P05538 268 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 KRT8P05787 483 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ABCB1P08183 1280 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 CYP4B1P13584 511 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ENDOUP21128 410 aaKnown RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 CYP2C18P33260 490 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 BAG6P46379 1132 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SLC26A2P50443 739 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ST13P50502 369 aaKnown RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 FADDQ13158 208 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ZBTB6Q15916 424 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 PRSS36Q5K4E3 855 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 BRMS1LQ5PSV4 323 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 C9orf57Q5W0N0 161 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ZNF549Q6P9A3 640 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 TUBA3EQ6PEY2 450 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 PLPPR4Q7Z2D5 763 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 GALNT5Q7Z7M9 940 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DPP9Q86TI2 863 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CYP4Z1Q86W10 505 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ZFAND4Q86XD8 727 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 GATAD2AQ86YP4 633 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SYTL1Q8IYJ3 562 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 COPS5Q92905 334 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SLC47A1Q96FL8 570 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ZNF560Q96MR9 790 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ASB2Q96Q27 587 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ATOH8Q96SQ7 321 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DUSP16Q9BY84 665 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 C6orf62Q9GZU0 229 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 MMP27Q9H306 513 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 R3HDMLQ9H3Y0 253 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ACTL8Q9H568 366 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 IKZF5Q9H5V7 419 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ACTR8Q9H981 624 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ANKHQ9HCJ1 492 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DDIT4Q9NX09 232 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 C3orf18Q9UK00 162 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 IKZF3Q9UKT9 509 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 NEU3Q9UQ49 428 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CRYL1Q9Y2S2 319 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 MAU2Q9Y6X3 613 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 U3KQV3 271 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 OR2A25A4D2G3 310 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CCRL2O00421 344 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DFNA5O60443 496 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 MAFKO60675 156 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 VPS4BO75351 444 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 PAPSS2O95340 614 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 ITGAMP11215 1152 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 LIPAP38571 399 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SLC26A3P40879 764 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 HTR3AP46098 478 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 DGKQP52824 942 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 AIF1P55008 147 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 GRIK2Q13002 908 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 LCP2Q13094 533 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SIM2Q14190 667 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 LAPTM4AQ15012 233 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CDK10Q15131 360 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 PCSK7Q16549 785 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SYT16Q17RD7 645 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 HABP4Q5JVS0 413 aaKnown RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 CELF3Q5SZQ8 465 aaKnown RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 TPRG1LQ5T0D9 272 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 PNCKQ6P2M8 343 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CATSPERGQ6ZRH7 1159 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CLEC20AQ6ZU45 233 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 GPRIN1Q7Z2K8 1008 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 SYVN1Q86TM6 617 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 OSTM1Q86WC4 334 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 LRRC52Q8N7C0 313 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 ZNF548Q8NEK5 533 aaPredicted RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 PDLIM5Q96HC4 596 aaKnown RBP6.7□□□□□ -1.34
VPS39-202ENST00000348544 ST6GAL2Q96JF0 529 aa6.7□□□□□ -1.34
VPS39-202ENST00000348544 CCDC115Q96NT0 180 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms