RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 REM2Q8IYK8 340 aaPredicted RBP15.22■□□□□ 0.03
UPF3B-202ENST00000345865 AGPAT4Q9NRZ5 378 aa15.22■□□□□ 0.03
UPF3B-202ENST00000345865 INTS6Q9UL03 887 aaKnown RBP15.22■□□□□ 0.03
UPF3B-202ENST00000345865 TMCO1Q9UM00 188 aa15.22■□□□□ 0.03
UPF3B-202ENST00000345865 ZNF106Q9H2Y7 1883 aaKnown RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 MYOFQ9NZM1 2061 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 SAC3D1A6NKF1 404 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 PDLIM1O00151 329 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 LSM1O15116 133 aaKnown RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 SLC25A14O95258 325 aaPredicted RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 TRIM16O95361 564 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 STAMBPO95630 424 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 G6PDP11413 515 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ZNF7P17097 686 aaPredicted RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 CD70P32970 193 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 BCL2L1Q07817 233 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 LMAN2Q12907 356 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 TRAF3Q13114 568 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ABRAXAS2Q15018 415 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ATP6AP1LQ52LC2 224 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 RFTN2Q52LD8 501 aaPredicted RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 NHSL2Q5HYW2 709 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 NANOGP8Q6NSW7 305 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 TPGS1Q6ZTW0 290 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 SNX20Q7Z614 316 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 CMTR2Q8IYT2 770 aaKnown RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ZNF689Q96CS4 500 aaPredicted RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ZNF558Q96NG5 402 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 OSBPL11Q9BXB4 747 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 GRIP2Q9C0E4 1043 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 EPB41L1Q9H4G0 881 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 IPPKQ9H8X2 491 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 NANOGQ9H9S0 305 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 ZIM2Q9NZV7 527 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 PTBP2Q9UKA9 531 aaKnown RBP15.21■□□□□ 0.03
UPF3B-202ENST00000345865 DENND4CQ5VZ89 1909 aa15.21■□□□□ 0.03
UPF3B-202ENST00000345865 TRBV5-4A0A0C4DH59 114 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 TCRBV5S2A0A599 114 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 FAM234BA2RU67 622 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 TYW5A2RUC4 315 aaKnown RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 VILLO15195 856 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 TEX28O15482 410 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 RPS3P23396 243 aaKnown RBP eCLIP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 ROR2Q01974 943 aaKnown RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 TLE2Q04725 743 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 CHRNA6Q15825 494 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 CWF19L1Q69YN2 538 aaKnown RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 ANKRD33Q7Z3H0 272 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 ZFAND4Q86XD8 727 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 HS6ST3Q8IZP7 471 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 PDPRQ8NCN5 879 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 ZFAND2BQ8WV99 257 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 TMEM79Q9BSE2 394 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 C2orf49Q9BVC5 232 aaPredicted RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 HERC2P3Q9BVR0 1158 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 MRPS26Q9BYN8 205 aaKnown RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 PIF1Q9H611 641 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 GPBP1L1Q9HC44 474 aaPredicted RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 PAK6Q9NQU5 681 aaPredicted RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 RIC8BQ9NVN3 520 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 ZMYM5Q9UJ78 669 aa15.21■□□□□ 0.02
UPF3B-202ENST00000345865 LEF1Q9UJU2 399 aaPredicted RBP15.21■□□□□ 0.02
UPF3B-202ENST00000345865 PDE4DIPQ5VU43 2346 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 SMIM31A0A1B0GVY4 71 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 GOLGA8CPA6NN73 597 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 ANKRD28O15084 1053 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 ACRV1P26436 265 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 GABRR2P28476 465 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 CTSOP43234 321 aaPredicted RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 PIK3CGP48736 1102 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 DEFB103AP81534 67 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 RETSATQ6NUM9 610 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 PTRH1Q86Y79 214 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 ADGRG2Q8IZP9 1017 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 RBFAQ8N0V3 343 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 ISG20Q96AZ6 181 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 HEBP1Q9NRV9 189 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 CCL27Q9Y4X3 112 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 INPP4BO15327 924 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 HNRNPRO43390 633 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 URODP06132 367 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 GJA1P17302 382 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 SLC5A9Q2M3M2 681 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 MYLK3Q32MK0 819 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 TRIM60Q495X7 471 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 GPRC6AQ5T6X5 926 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 DLEU7Q6UYE1 221 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 SLC39A5Q6ZMH5 540 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 CBR4Q8N4T8 237 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 CCT7Q99832 543 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 KCTD14Q9BQ13 255 aaPredicted RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 APOL5Q9BWW9 433 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 TRIM4Q9C037 500 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 RBM38Q9H0Z9 239 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 RC3H2Q9HBD1 1191 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 MRPL17Q9NRX2 175 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 OLAHQ9NV23 265 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 CFAP97Q9P2B7 532 aa15.2■□□□□ 0.02
UPF3B-202ENST00000345865 TNPO3Q9Y5L0 923 aaKnown RBP15.2■□□□□ 0.02
UPF3B-202ENST00000345865 GLYATL1P3A0A0U1RQE8 302 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms