RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MBLAC1A4D2B0 266 aaPredicted RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 C2orf78A6NCI8 922 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 KPNA5O15131 536 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 STATHP02808 62 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 IDO1P14902 403 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 SEPHS1P49903 392 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 NANOGP8Q6NSW7 305 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 FUT10Q6P4F1 479 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 TDRD1Q9BXT4 1180 aaKnown RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 CRISPLD1Q9H336 500 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 NANOGQ9H9S0 305 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 RNF11Q9Y3C5 154 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 HLA-DPA1P20036 260 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 CYP2C18P33260 490 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 S100A3P33764 101 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 BCL2L1Q07817 233 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 SELPLGQ14242 412 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 MARVELD2Q8N4S9 558 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 BEND7Q8N7W2 519 aaPredicted RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 C7orf57Q8NEG2 295 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 HPS1Q92902 700 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 TMBIM1Q969X1 311 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 SNX8Q9Y5X2 465 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 NINQ8N4C6 2090 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 HHLA1C9JL84 531 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 VILLO15195 856 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 FFAR2O15552 330 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 PRAMEF12O95522 483 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 COL11A1P12107 1806 aaPredicted RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 TRIM60Q495X7 471 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 EGFLAMQ63HQ2 1017 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 CYS1Q717R9 158 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 SLC24A5Q71RS6 500 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 HMGN2P46Q86SG4 172 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 PLD3Q8IV08 490 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 GPR78Q96P69 363 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 MTG2Q9H4K7 406 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 COMMD8Q9NX08 183 aa11.78□□□□□ -0.52
USP1-201ENST00000339950 SMPD3Q9NY59 655 aaPredicted RBP11.78□□□□□ -0.52
USP1-201ENST00000339950 EVPLLA8MZ36 301 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 RAD51BO15315 384 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 ACSL4O60488 711 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 WDR47O94967 919 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 FADS2O95864 444 aaKnown RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 SLC6A2P23975 617 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 STK19P49842 368 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 SYT16Q17RD7 645 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 RFTN2Q52LD8 501 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 PIWIL3Q7Z3Z3 882 aaKnown RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 AHI1Q8N157 1196 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 ZCCHC7Q8N3Z6 543 aaKnown RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 AARSD1Q9BTE6 412 aaKnown RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 C6orf62Q9GZU0 229 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 CFAP99D6REC4 459 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 PRMT5O14744 637 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 LDB2O43679 373 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 ZNF7P17097 686 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 SCNN1AP37088 669 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 ALDH9A1P49189 494 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 AIF1P55008 147 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 KIAA0408Q6ZU52 694 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 FIBCD1Q8N539 461 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 TRPV1Q8NER1 839 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 TRIM54Q9BYV2 358 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 KATNBL1Q9H079 304 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 POLE4Q9NR33 117 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 IFT80Q9P2H3 777 aaPredicted RBP11.77□□□□□ -0.52
USP1-201ENST00000339950 IKZF3Q9UKT9 509 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 TLR6Q9Y2C9 796 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 ST14Q9Y5Y6 855 aa11.77□□□□□ -0.52
USP1-201ENST00000339950 RGS5O15539 181 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 RECQL5O94762 991 aaPredicted RBP11.77□□□□□ -0.53
USP1-201ENST00000339950 HCAR3P49019 387 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 SGSHP51688 502 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 STC1P52823 247 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 MCCD1P59942 119 aaPredicted RBP11.77□□□□□ -0.53
USP1-201ENST00000339950 SEMA3BQ13214 749 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 SYTL3Q4VX76 610 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 PAGE2BQ5JRK9 111 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 C6orf136Q5SQH8 315 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 AFTPHQ6ULP2 937 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 CYP20A1Q6UW02 462 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 ENPP6Q6UWR7 440 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 NT5C3BQ969T7 300 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 CENPNQ96H22 339 aaPredicted RBP11.77□□□□□ -0.53
USP1-201ENST00000339950 SUSD3Q96L08 255 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 CTPS2Q9NRF8 586 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 UTS2RQ9UKP6 389 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 SMIM18P0DKX4 95 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 CDH3P22223 829 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 SCAPQ12770 1279 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 TGFBIQ15582 683 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 DOK6Q6PKX4 331 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 KDELC1Q6UW63 502 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 P3H2Q8IVL5 708 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 ZC3H7AQ8IWR0 971 aaKnown RBP11.77□□□□□ -0.53
USP1-201ENST00000339950 MFSD1Q9H3U5 465 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 ABCB10Q9NRK6 738 aa11.77□□□□□ -0.53
USP1-201ENST00000339950 LOC730098B7Z3J9 87 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms