RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ACTR1AP61163 376 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 GSTM4Q03013 218 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 DMPKQ09013 629 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 NAPRTQ6XQN6 538 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 FAM83HQ6ZRV2 1179 aaPredicted RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 TAF8Q7Z7C8 310 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 ELMO1Q92556 727 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 CCDC77Q9BR77 488 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 GALPQ9UBC7 116 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 MTO1Q9Y2Z2 717 aaKnown RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 VWA7Q9Y334 891 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 IKBKGQ9Y6K9 419 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 EP300Q09472 2414 aaPredicted RBP21.77■■□□□ 1.08
SDC3-202ENST00000339394 PRR19A6NJB7 356 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 YY2O15391 372 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 INHBAP08476 426 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 NUDT17P0C025 328 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 GCAP28676 217 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 CDKN2DP55273 166 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 TIAL1Q01085 375 aaKnown RBP eCLIP21.77■■□□□ 1.08
SDC3-202ENST00000339394 HECTD2Q5U5R9 776 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 XKR5Q6UX68 686 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 GATAD2AQ86YP4 633 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 LILRA3Q8N6C8 439 aaPredicted RBP21.77■■□□□ 1.08
SDC3-202ENST00000339394 HM13Q8TCT9 377 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 DHRS4Q9BTZ2 278 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 EDEM2Q9BV94 578 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 OSGEPL1Q9H4B0 414 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 SARS2Q9NP81 518 aaKnown RBP21.77■■□□□ 1.08
SDC3-202ENST00000339394 SPATS2LQ9NUQ6 558 aaKnown RBP21.77■■□□□ 1.08
SDC3-202ENST00000339394 DNAAF2Q9NVR5 837 aaKnown RBP21.77■■□□□ 1.08
SDC3-202ENST00000339394 FETUBQ9UGM5 382 aa21.77■■□□□ 1.08
SDC3-202ENST00000339394 FAM95CA0A1B0GW59 222 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 LMO7DNF2Z398 122 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 ITGA2BP08514 1039 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 AOAHP28039 575 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 CLCN7P51798 805 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 CLCNKAP51800 687 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 ILF2Q12905 390 aaKnown RBP21.76■■□□□ 1.07
SDC3-202ENST00000339394 METRNLQ641Q3 311 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 OTOAQ7RTW8 1153 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 KANSL1Q7Z3B3 1105 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 GKN2Q86XP6 184 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 SDR16C5Q8N3Y7 309 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 OR2W6PQ8NHA6 318 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 DCAKDQ8WVC6 231 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 ELMO2Q96JJ3 720 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 TAAR2Q9P1P5 351 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 CSNK1G3Q9Y6M4 447 aa21.76■■□□□ 1.07
SDC3-202ENST00000339394 NEMP2A6NFY4 417 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 PCDHGA12O60330 932 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 FOXD2O60548 495 aaPredicted RBP21.75■■□□□ 1.07
SDC3-202ENST00000339394 ZNF883P0CG24 379 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 SAT1P21673 171 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 BOP1Q14137 746 aaKnown RBP21.75■■□□□ 1.07
SDC3-202ENST00000339394 AASDHQ4L235 1098 aaPredicted RBP21.75■■□□□ 1.07
SDC3-202ENST00000339394 FAM45BPQ6NSW5 357 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 FAM45AQ8TCE6 357 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 GPR21Q99679 349 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 GPR22Q99680 433 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 OLFM1Q99784 485 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 COG4Q9H9E3 785 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 LATS2Q9NRM7 1088 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 TAS2R13Q9NYV9 303 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 TBC1D29Q9UFV1 150 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 ZNF180Q9UJW8 692 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 DOLKQ9UPQ8 538 aa21.75■■□□□ 1.07
SDC3-202ENST00000339394 UQCRHLA0A096LP55 91 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 HMX2A2RU54 273 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 LIN7AO14910 233 aaPredicted RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 VPS26AO75436 327 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 UQCRHP07919 91 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 GIMD1P0DJR0 217 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 H2AFXP16104 143 aaPredicted RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 CD9P21926 228 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 IDSP22304 550 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 RPL10P27635 214 aaKnown RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 PGGT1BP53609 377 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 HSPA14Q0VDF9 509 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 DEFB133Q30KQ1 61 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 MROH9Q5TGP6 573 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 ADGRD1Q6QNK2 874 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 PIM3Q86V86 326 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SPNS2Q8IVW8 549 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SIDT2Q8NBJ9 832 aaKnown RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 FAM46DQ8NEK8 389 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 GIMAP7Q8NHV1 300 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 ASZ1Q8WWH4 475 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SLC30A3Q99726 388 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 TMEM9BQ9NQ34 198 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 PRDM8Q9NQV8 689 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 ARGLU1Q9NWB6 273 aaPredicted RBP21.74■■□□□ 1.07
SDC3-202ENST00000339394 SLC24A2Q9UI40 661 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SLC39A10Q9ULF5 831 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SLC5A10A0PJK1 596 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 KPNA5O15131 536 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 GDF9O60383 454 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 SNX2O60749 519 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 GPC4O75487 556 aa21.74■■□□□ 1.07
SDC3-202ENST00000339394 FDXRP22570 491 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms