RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DCDC1P59894 354 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 IRF8Q02556 426 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 RNF180Q86T96 592 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 NTPCRQ9BSD7 190 aaKnown RBP9.77□□□□□ -0.85
COL6A3-201ENST00000295550 PDZD7Q9H5P4 517 aa9.77□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF208O43345 1280 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PRKD3O94806 890 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ECHS1P30084 290 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 HTR7P34969 479 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 HERC3Q15034 1050 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 HMBOX1Q6NT76 420 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ZYG11AQ6WRX3 759 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PIGZQ86VD9 579 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SPATA6LQ8N4H0 392 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CEP295NLQ96MC4 621 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CCDC86Q9H6F5 360 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ANKRA2Q9H9E1 313 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 EME2A4GXA9 379 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 DNTTP04053 509 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TUFMP49411 452 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 METTL21CQ5VZV1 264 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CLIP4Q8N3C7 705 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 MTMR14Q8NCE2 650 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CHST4Q8NCG5 386 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CNPPD1Q9BV87 410 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 MFSD11O43934 449 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FTH1P02794 183 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ICAM3P32942 547 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 USP4Q13107 963 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ABCA11PQ4W5N1 156 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 LIN52Q52LA3 116 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 GCNT6Q5T4J0 391 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 STRADAQ7RTN6 431 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PHC2Q8IXK0 858 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 C12orf43Q96C57 262 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SENP8Q96LD8 212 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF780BQ9Y6R6 833 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 URODP06132 367 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 UROSP10746 265 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 RORCP51449 518 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PFKPQ01813 784 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 HSPA14Q0VDF9 509 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 STXBP5Q5T5C0 1151 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FAAH2Q6GMR7 532 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 KCTD8Q6ZWB6 473 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 RELL1Q8IUW5 271 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TMIEQ8NEW7 156 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 RREB1Q92766 1687 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 MTFR1LQ9H019 292 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PNPOQ9NVS9 261 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 MAN2B2Q9Y2E5 1009 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 KCNIP3Q9Y2W7 256 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TRPV2Q9Y5S1 764 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 KIF13BQ9NQT8 1826 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 C5orf51A6NDU8 294 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 A8MX80 341 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FCGRTP55899 365 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PITPNAQ00169 270 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 LYPLAL1Q5VWZ2 237 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SCIMPQ6UWF3 145 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CYP4X1Q8N118 509 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 GALNT15Q8N3T1 639 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 GALNT6Q8NCL4 622 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FAM84AQ96KN4 292 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TTLL2Q9BWV7 592 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 NXF3Q9H4D5 531 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 AASSQ9UDR5 926 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TP53BP1Q12888 1972 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ARPC4-TTLL3A0A0A6YYG9 625 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 C2orf71A6NGG8 1288 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PLSCR1O15162 318 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FAM155BO75949 473 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TSPAN8P19075 237 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SERPINA4P29622 427 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CACUL1Q86Y37 369 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SCN7AQ01118 1682 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ZSCAN5BA6NJL1 495 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CATP04040 527 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TFEBP19484 476 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 POTEHQ6S545 545 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 CHRDL2Q6WN34 429 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SLC26A9Q7LBE3 791 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 P2RY11Q96G91 374 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 TAS2R7Q9NYW3 318 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ALG5Q9Y673 324 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 BTAF1O14981 1849 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 C2CD4BA6NLJ0 364 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PAPSS1O43252 624 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ARL3P36405 182 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 FNDC3BQ53EP0 1204 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PPM1LQ5SGD2 360 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 UBE2J2Q8N2K1 259 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SYNPOQ8N3V7 929 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 ACOT12Q8WYK0 555 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PRDM12Q9H4Q4 367 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 EBF2Q9HAK2 575 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 PPEF2O14830 753 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 AP2A1O95782 977 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 POLR2JP52435 117 aaKnown RBP9.76□□□□□ -0.85
COL6A3-201ENST00000295550 MXD1Q05195 221 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms