RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.08■□□□□ 0.33
SHANK1-201ENST00000293441 REP15Q6BDI9 236 aa17.08■□□□□ 0.33
SHANK1-201ENST00000293441 SLC22A17Q8WUG5 538 aa17.08■□□□□ 0.33
SHANK1-201ENST00000293441 TMCC2O75069 709 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 SLC1A5Q15758 541 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 PIK3R6Q5UE93 754 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 FSTL4Q6MZW2 842 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 B3GNT6Q6ZMB0 384 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 WFIKKN2Q8TEU8 576 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 PLEKHG4BQ96PX9 1271 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 OSBPL11Q9BXB4 747 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 FOXO6A8MYZ6 492 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 SAP18O00422 153 aaKnown RBP17.08■□□□□ 0.32
SHANK1-201ENST00000293441 NR2F6P10588 404 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 CAMK1Q14012 370 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 HNRNPDQ14103 355 aaKnown RBP17.08■□□□□ 0.32
SHANK1-201ENST00000293441 SNAPC1Q16533 368 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 CA9Q16790 459 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 AMZ2Q86W34 360 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 ATCAYQ86WG3 371 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 SFRP1Q8N474 314 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 KBTBD8Q8NFY9 601 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 OR52J3Q8NH60 311 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 KAT2AQ92830 837 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 C12orf42Q96LP6 360 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 ZNF446Q9NWS9 450 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 GPC6Q9Y625 555 aaPredicted RBP17.08■□□□□ 0.32
SHANK1-201ENST00000293441 GPR107Q5VW38 600 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 ERICH5Q6P6B1 374 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 FUBP3Q96I24 572 aaKnown RBP eCLIP17.08■□□□□ 0.32
SHANK1-201ENST00000293441 SEZ6LQ9BYH1 1024 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 PHF11Q9UIL8 331 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 CLEC4AQ9UMR7 237 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 ERVK-11Q9UQG0 969 aa17.08■□□□□ 0.32
SHANK1-201ENST00000293441 TCEA3O75764 348 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ASLP04424 464 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 FABP3P05413 133 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PTGER3P43115 390 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 AKIRIN2Q53H80 203 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 CLEC20AQ6ZU45 233 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 TBC1D21Q8IYX1 336 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 NPLOC4Q8TAT6 608 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 NKD2Q969F2 451 aaPredicted RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ABCB10Q9NRK6 738 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 YIPF1Q9Y548 306 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 NFKBIEO00221 500 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 HOXC12P31275 282 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 GRB14Q14449 540 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ARL13AQ5H913 290 aaPredicted RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 SNX20Q7Z614 316 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 CRYBG2Q8N1P7 616 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PIGKQ92643 395 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ESAMQ96AP7 390 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PNPLA8Q9NP80 782 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 FADS2O95864 444 aaKnown RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PRR5P85299 388 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 GDPD4Q6W3E5 623 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 SMPDL3BQ92485 455 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PCBD2Q9H0N5 130 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 RASSF1Q9NS23 344 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 DNAJC28Q9NX36 388 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 HCN3Q9P1Z3 774 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 WRAP73Q9P2S5 460 aaPredicted RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 UBE2QL1A1L167 161 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ELOVL7A1L3X0 281 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 TPST2O60704 377 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 PTGES3Q15185 160 aaKnown RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 SLC30A6Q6NXT4 461 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 TAPBPLQ9BX59 468 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ASB3Q9Y575 518 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ROBO1Q9Y6N7 1651 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ZNF8P17098 575 aaPredicted RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 VARSP26640 1264 aaKnown RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 ALDH4A1P30038 563 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 SLC26A3P40879 764 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 LCP2Q13094 533 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 RNASE12Q5GAN4 147 aaKnown RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 KCT2Q8NC54 265 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 HAPLN3Q96S86 360 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 CARS2Q9HA77 564 aaKnown RBP17.07■□□□□ 0.32
SHANK1-201ENST00000293441 SRRDQ9UH36 339 aa17.07■□□□□ 0.32
SHANK1-201ENST00000293441 CD247P20963 164 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 CDK9P50750 372 aaKnown RBP17.06■□□□□ 0.32
SHANK1-201ENST00000293441 NAPRTQ6XQN6 538 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 TSEN15Q8WW01 171 aaKnown RBP17.06■□□□□ 0.32
SHANK1-201ENST00000293441 CORO1CQ9ULV4 474 aaPredicted RBP17.06■□□□□ 0.32
SHANK1-201ENST00000293441 CCDC182A6NF36 153 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 CLUP10909 449 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 KCNA5P22460 613 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 DDX6P26196 483 aaKnown RBP eCLIP17.06■□□□□ 0.32
SHANK1-201ENST00000293441 ARFIP1P53367 373 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 C1QTNF8P60827 252 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 ADGRG6Q86SQ4 1221 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 GPR88Q9GZN0 384 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 ZNF222Q9UK12 451 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 STX16-NPEPL1H3BU86 382 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 TNFRSF11BO00300 401 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 STX16O14662 325 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 UGT2B11O75310 529 aa17.06■□□□□ 0.32
SHANK1-201ENST00000293441 CPN2P22792 545 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms