RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SPG21Q9NZD8 308 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 OGDHLQ9ULD0 1010 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ST14Q9Y5Y6 855 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 DHRS12A0PJE2 317 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 TAPBPO15533 448 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 ATP6V1B1P15313 513 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 NELFEP18615 380 aaKnown RBP19.77■□□□□ 0.76
VPS53-201ENST00000291074 ITGALP20701 1170 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 PIK3CGP48736 1102 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 PCBP2Q15366 365 aaKnown RBP eCLIP19.77■□□□□ 0.765e-9■■■■■ 51.4
VPS53-201ENST00000291074 COQ5Q5HYK3 327 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 PIF1Q9H611 641 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 CCM2LQ9NUG4 571 aaPredicted RBP19.77■□□□□ 0.76
VPS53-201ENST00000291074 GNPTGQ9UJJ9 305 aa19.77■□□□□ 0.76
VPS53-201ENST00000291074 LSM7Q9UK45 103 aaKnown RBP19.77■□□□□ 0.76
VPS53-201ENST00000291074 GLYATL1P3A0A0U1RQE8 302 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 SOCS2O14508 198 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 EEDO75530 441 aaKnown RBP19.77■□□□□ 0.75
VPS53-201ENST00000291074 ABRAXAS2Q15018 415 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 PDCD4Q53EL6 469 aaKnown RBP19.77■□□□□ 0.75
VPS53-201ENST00000291074 LCN8Q6JVE9 175 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 SLC2A7Q6PXP3 512 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 ERMP1Q7Z2K6 904 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 CHERPQ8IWX8 916 aaKnown RBP19.77■□□□□ 0.75
VPS53-201ENST00000291074 TMEM199Q8N511 208 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 IPPKQ9H8X2 491 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 RC3H2Q9HBD1 1191 aaKnown RBP19.77■□□□□ 0.75
VPS53-201ENST00000291074 ARMC1Q9NVT9 282 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 CRLS1Q9UJA2 301 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 SH3BP1Q9Y3L3 701 aa19.77■□□□□ 0.75
VPS53-201ENST00000291074 NPIPB15A6NHN6 443 aaPredicted RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 S100BP04271 92 aaPredicted RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 FAM58BPP0C7Q3 252 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 PABPC4LP0CB38 370 aaKnown RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 ACRV1P26436 265 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 IRX1P78414 480 aaPredicted RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 LIPEQ05469 1076 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 TRAF3Q13114 568 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 SLC30A9Q6PML9 568 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 DDX53Q86TM3 631 aaKnown RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 ITIH5Q86UX2 942 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 ADGRG2Q8IZP9 1017 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 TRIM54Q9BYV2 358 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 ALG2Q9H553 416 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 ACTR3BQ9P1U1 418 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 ATP11BQ9Y2G3 1177 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 RNF11Q9Y3C5 154 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 RAD51BO15315 384 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 PARNO95453 639 aaKnown RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 TFAP2AP05549 437 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 RPS3P23396 243 aaKnown RBP eCLIP19.76■□□□□ 0.75
VPS53-201ENST00000291074 GSTT1P30711 240 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 VEGFBP49765 207 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 CREB5Q02930 508 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 FOXM1Q08050 763 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 BNIP2Q12982 314 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 NR6A1Q15406 480 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 PLEKHG6Q3KR16 790 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 MBOAT1Q6ZNC8 495 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 AHI1Q8N157 1196 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 EGFL8Q99944 293 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 SUN2Q9UH99 717 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 POLR3HQ9Y535 204 aaPredicted RBP19.76■□□□□ 0.75
VPS53-201ENST00000291074 KIAA1671Q9BY89 1806 aa19.76■□□□□ 0.75
VPS53-201ENST00000291074 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 AQP12BA6NM10 295 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 TNFAIP8O95379 198 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 G6PDP11413 515 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 CCL5P13501 91 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 PSMC3P17980 439 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 MRPL19P49406 292 aaKnown RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 PRMT2P55345 433 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 HTRA3P83110 453 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 PRKCQQ04759 706 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 GRIK2Q13002 908 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ZBTB49Q6ZSB9 765 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 AQP12AQ8IXF9 295 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 FIBCD1Q8N539 461 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 METTL25Q8N6Q8 603 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 PDPRQ8NCN5 879 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 MRPS31Q92665 395 aaKnown RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 ACDQ96AP0 544 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 VOPP1Q96AW1 172 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ACTL8Q9H568 366 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ATP13A3Q9H7F0 1226 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 LEF1Q9UJU2 399 aaPredicted RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 A0A1W2PRU2 124 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ARHGAP10A1A4S6 786 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 FFAR3O14843 346 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 INPP4BO15327 924 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 GPR42O15529 346 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 CLPTM1O96005 669 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 MNX1P50219 401 aaPredicted RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 LRRC73Q5JTD7 316 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 RFLNAQ6ZTI6 216 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ADGRG5Q8IZF4 528 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 CMTM8Q8IZV2 173 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 GPR26Q8NDV2 337 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 TSPEARQ8WU66 669 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 KCTD14Q9BQ13 255 aaPredicted RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms