RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMEM169Q96HH4 297 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CHID1Q9BWS9 393 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 PTPRDP23468 1912 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 PRUNE2Q8WUY3 3088 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CAPN15O75808 1086 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 S100BP04271 92 aaPredicted RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 RPS17P08708 135 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 GTF2H2Q13888 395 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 GTF2H2CQ6P1K8 395 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 LPCAT2Q7L5N7 544 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ERMP1Q7Z2K6 904 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CMTM8Q8IZV2 173 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 GPR150Q8NGU9 434 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 FOXJ1Q92949 421 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ZNF334Q9HCZ1 680 aaPredicted RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 MRPL40Q9NQ50 206 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 NRG2O14511 850 aaPredicted RBP16.38■□□□□ 0.21
VPS54-201ENST00000272322 H6PDO95479 791 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 C1QCP02747 245 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ZDHHC11BP0C7U3 371 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 GABRR2P28476 465 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 GCNT7Q6ZNI0 430 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 CLEC4FQ8N1N0 589 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 PDZD8Q8NEN9 1154 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ITCHQ96J02 903 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 TSSK3Q96PN8 268 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ADI1Q9BV57 179 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 HIPK3Q9H422 1215 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 MTG2Q9H4K7 406 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 IL26Q9NPH9 171 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 F11P03951 625 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 SLC5A2P31639 672 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 PIGFQ07326 219 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 GALNT1Q10472 559 aaPredicted RBP16.38■□□□□ 0.21
VPS54-201ENST00000272322 PRKG2Q13237 762 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 CYP20A1Q6UW02 462 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ADGRG5Q8IZF4 528 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 HS6ST3Q8IZP7 471 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 BIRC7Q96CA5 298 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ATG10Q9H0Y0 220 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ELOVL2Q9NXB9 296 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 IL17CQ9P0M4 197 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 FNIP2Q9P278 1114 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 CDC14AQ9UNH5 594 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 HNF1BP35680 557 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 CASP9P55211 416 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 NFKB2Q00653 900 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 BBS7Q8IWZ6 715 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 SGCDQ92629 289 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ROPN1LQ96C74 230 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 MYO19Q96H55 970 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ZNF597Q96LX8 424 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 HOPXQ9BPY8 73 aaPredicted RBP16.38■□□□□ 0.21
VPS54-201ENST00000272322 OSBPL11Q9BXB4 747 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 ADNPQ9H2P0 1102 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 CCM2LQ9NUG4 571 aaPredicted RBP16.38■□□□□ 0.21
VPS54-201ENST00000272322 AIG1Q9NVV5 245 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 AASSQ9UDR5 926 aa16.38■□□□□ 0.21
VPS54-201ENST00000272322 PFDN6O15212 129 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 GSTA4O15217 222 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 MAN1A2O60476 641 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 SLC26A3P40879 764 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 KPNA1P52294 538 aaPredicted RBP16.37■□□□□ 0.21
VPS54-201ENST00000272322 BCL2L1Q07817 233 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 VEPH1Q14D04 833 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 SPANXN4Q5MJ08 99 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 AHI1Q8N157 1196 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 TTC30BQ8N4P2 665 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 FIBCD1Q8N539 461 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 BEND7Q8N7W2 519 aaPredicted RBP16.37■□□□□ 0.21
VPS54-201ENST00000272322 ZNF461Q8TAF7 563 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 GPATCH1Q9BRR8 931 aaKnown RBP16.37■□□□□ 0.21
VPS54-201ENST00000272322 MRPS26Q9BYN8 205 aaKnown RBP16.37■□□□□ 0.21
VPS54-201ENST00000272322 LOC730098B7Z3J9 87 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 GNGT2O14610 69 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 ITPKAP23677 461 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 CD70P32970 193 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 SPATA17Q96L03 361 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 IKZF5Q9H5V7 419 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 CREBZFQ9NS37 354 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 VAPAQ9P0L0 249 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 CFAP97Q9P2B7 532 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 LIMD1Q9UGP4 676 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 COMMD3-BMI1R4GMX3 469 aa16.37■□□□□ 0.21
VPS54-201ENST00000272322 A0A1W2PRU2 124 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 TYW5A2RUC4 315 aaKnown RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 RPLP2P05387 115 aaKnown RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 CST5P28325 142 aaPredicted RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 CLCN7P51798 805 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 TRAP1Q12931 704 aaKnown RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 ZSWIM9Q86XI8 627 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ABTB1Q969K4 478 aaPredicted RBP16.36■□□□□ 0.21
VPS54-201ENST00000272322 NSMCE2Q96MF7 247 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 SMURF2Q9HAU4 748 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 LHX3Q9UBR4 397 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 EBF1Q9UH73 591 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 SLCO3A1Q9UIG8 710 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 ANAPC2Q9UJX6 822 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 FADS3Q9Y5Q0 445 aa16.36■□□□□ 0.21
VPS54-201ENST00000272322 OR7A17O14581 309 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms