RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CTHP32929 405 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 RBBP7Q16576 425 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 PLA2G4EQ3MJ16 856 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 SLC44A4Q53GD3 710 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 HDDC3Q8N4P3 179 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 BTN2A2Q8WVV5 523 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 GLYATL1Q969I3 302 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 L3HYPDHQ96EM0 354 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 NSL1Q96IY1 281 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 OR2AG1Q9H205 316 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 KCNK12Q9HB15 430 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 SLC40A1Q9NP59 571 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 MUC22E2RYF6 1773 aaPredicted RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 CAPN14A8MX76 684 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 SPECC1L-ADORA2AF8WAN1 911 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 FFAR2O15552 330 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 SYNCRIPO60506 623 aaKnown RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 ALOX15P16050 662 aaPredicted RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 DGKAP23743 735 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 KIR2DL1P43626 348 aaPredicted RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 PIK3CGP48736 1102 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 RGS4P49798 205 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 TMEM115Q12893 351 aaPredicted RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 CYHR1Q6ZMK1 362 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 LMNTD1Q8N9Z9 388 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 UTP4Q969X6 686 aaKnown RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 PTCD3Q96EY7 689 aaKnown RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 DTD2Q96FN9 168 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 TXLNGQ9NUQ3 528 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 PIAS3Q9Y6X2 628 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 SCAMP1O15126 338 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 SOD1P00441 154 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 GPR1P46091 355 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 ABRQ12979 859 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 CST6Q15828 149 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 LYPLAL1Q5VWZ2 237 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 PYCR2Q96C36 320 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 MIPEPQ99797 713 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 HGH1Q9BTY7 390 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 ZSCAN5AQ9BUG6 496 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 CD207Q9UJ71 328 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 ZNF225Q9UK10 706 aa16.22■□□□□ 0.19
USP4-201ENST00000265560 PCYT1BQ9Y5K3 369 aaPredicted RBP16.22■□□□□ 0.19
USP4-201ENST00000265560 SYCE1LA8MT33 242 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 B2RBV5 119 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 MAT2AP31153 395 aaKnown RBP16.21■□□□□ 0.19
USP4-201ENST00000265560 NME5P56597 212 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TAS2R38P59533 333 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TMEM196Q5HYL7 178 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 PIP5KL1Q5T9C9 394 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 ANKS6Q68DC2 871 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 Q7L0L9 218 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 DDIASQ8IXT1 998 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 FLCNQ8NFG4 579 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 NUS1Q96E22 293 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 COQ10AQ96MF6 247 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TBC1D10AQ9BXI6 508 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 EML4Q9HC35 981 aaKnown RBP16.21■□□□□ 0.19
USP4-201ENST00000265560 CDYLQ9Y232 598 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 DNAJC15Q9Y5T4 150 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 IGLV3-16A0A075B6K0 115 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 SDHDO14521 159 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 CCDC22O60826 627 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 LINC00032P0C843 101 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TCEA2Q15560 299 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TMEM220Q6QAJ8 160 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 CRTC3Q6UUV7 619 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 ASRGL1Q7L266 308 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 TRAM1L1Q8N609 369 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 KIAA1958Q8N8K9 716 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 PPP1R16AQ96I34 528 aa16.21■□□□□ 0.19
USP4-201ENST00000265560 CNOT6Q9ULM6 557 aaKnown RBP16.21■□□□□ 0.19
USP4-201ENST00000265560 C1QTNF3-AMACRE9PGA6 284 aa16.21■□□□□ 0.18
USP4-201ENST00000265560 DNAJC8O75937 253 aaPredicted RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 PAK4O96013 591 aaPredicted RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 NQO1P15559 274 aaKnown RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 PDHA2P29803 388 aa16.21■□□□□ 0.18
USP4-201ENST00000265560 MYLK4Q86YV6 388 aaPredicted RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 RAVER1Q8IY67 606 aaKnown RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 EFCAB3Q8N7B9 438 aa16.21■□□□□ 0.18
USP4-201ENST00000265560 CDYL2Q8N8U2 506 aa16.21■□□□□ 0.18
USP4-201ENST00000265560 FAM126AQ9BYI3 521 aaPredicted RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 NOL11Q9H8H0 719 aaKnown RBP16.21■□□□□ 0.18
USP4-201ENST00000265560 PCTPQ9UKL6 214 aa16.21■□□□□ 0.18
USP4-201ENST00000265560 WDFY4Q6ZS81 3184 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 CCNT2O60583 730 aaKnown RBP16.2■□□□□ 0.18
USP4-201ENST00000265560 ADAM23O75077 832 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 PCCBP05166 539 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 COL9A1P20849 921 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 AOAHP28039 575 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 MAGEA9P43362 315 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 VASPP50552 380 aaPredicted RBP16.2■□□□□ 0.18
USP4-201ENST00000265560 PTPN5P54829 565 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 NFKB2Q00653 900 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 MTSS1LQ765P7 747 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 SYVN1Q86TM6 617 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 TRAPPC5Q8IUR0 188 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 CXorf40AQ8TE69 158 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 PRO3102Q9H379 93 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 TAS2R1Q9NYW7 299 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms