RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PIGVQ9NUD9 493 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 IMP3Q9NV31 184 aaKnown RBP10.63□□□□□ -0.71
CD44-201ENST00000263398 MRPS33Q9Y291 106 aaKnown RBP10.63□□□□□ -0.71
CD44-201ENST00000263398 N6AMT1Q9Y5N5 214 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 TLL2Q9Y6L7 1015 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 ZNF536O15090 1300 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 ZNF541Q9H0D2 1346 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 RBM47A0AV96 593 aaKnown RBP10.63□□□□□ -0.71
CD44-201ENST00000263398 FAM86C2PA6NEL3 165 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 CXCR6O00574 342 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 POP4O95707 220 aaKnown RBP10.63□□□□□ -0.71
CD44-201ENST00000263398 ACLYP53396 1101 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 RAB25P57735 213 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 HERVK_113P63132 956 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 TEAD4Q15561 434 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 DPY19L1Q2PZI1 675 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 TIGD5Q53EQ6 642 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 PLEKHG4Q58EX7 1191 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 MED27Q6P2C8 311 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 ZDHHC21Q8IVQ6 265 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 NAT16Q8N8M0 369 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 SPACA7Q96KW9 195 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 ERVK-6Q9BXR3 956 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 BCO2Q9BYV7 579 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 EBF2Q9HAK2 575 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 PHPT1Q9NRX4 125 aaPredicted RBP10.63□□□□□ -0.71
CD44-201ENST00000263398 DEC1Q9P2X7 70 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 ING4Q9UNL4 249 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 PCDHGA11Q9Y5H2 935 aa10.63□□□□□ -0.71
CD44-201ENST00000263398 PSMD11O00231 422 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ITM2AO43736 263 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 IFNGP01579 166 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 AOC1P19801 751 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ITGAXP20702 1163 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KELP23276 732 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 IRF9Q00978 393 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 LIN54Q6MZP7 749 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 CIR1Q86X95 450 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 RELL1Q8IUW5 271 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KLHL23Q8NBE8 558 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 VANGL1Q8TAA9 524 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 RAB2BQ8WUD1 216 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FAR1Q8WVX9 515 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 TTLL2Q9BWV7 592 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PCDHAC1Q9H158 963 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 IGFLR1Q9H665 355 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 DNAJB9Q9UBS3 223 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 RUVBL1Q9Y265 456 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 DGKBQ9Y6T7 804 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 COL1A1P02452 1464 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 A0A0G2JLL6 359 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 TFECO14948 347 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 SSNA1O43805 119 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FGF19O95750 216 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 C8GP07360 202 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PTPN5P54829 565 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 RHAGQ02094 409 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 RFTN1Q14699 578 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 NOL9Q5SY16 702 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 BICRALQ6AI39 1079 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PRRT2Q7Z6L0 340 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 AKAP14Q86UN6 197 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ANKRD46Q86W74 232 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SCAMP5Q8TAC9 235 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SLC35F5Q8WV83 523 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 C1orf21Q9H246 121 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 HIPK3Q9H422 1215 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ING3Q9NXR8 418 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FAM53CQ9NYF3 392 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SLC17A6Q9P2U8 582 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ROBO1Q9Y6N7 1651 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 MAGEB17A8MXT2 336 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 MPZL2O60487 215 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ECDO95905 644 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 EOMESO95936 686 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PRKCHP24723 683 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PTX3P26022 381 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 EEFSECP57772 596 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 CCNIQ14094 377 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KCNA10Q16322 511 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SNAPC1Q16533 368 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SLC9A4Q6AI14 798 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 OLFML1Q6UWY5 402 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FAM131AQ6UXB0 335 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KIAA1324Q6UXG2 1013 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 PHYKPLQ8IUZ5 450 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 AHI1Q8N157 1196 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SIDT2Q8NBJ9 832 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 RASSF5Q8WWW0 418 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KCTD13Q8WZ19 329 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 PLD4Q96BZ4 506 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SHISA4Q96DD7 197 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 OR52B2Q96RD2 323 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FAM240BA0A1B0GVZ2 78 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 ZBTB48P10074 688 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 CKMT2P17540 419 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 XRCC1P18887 633 aaPredicted RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 LAPTM5Q13571 262 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 MSS51Q4VC12 460 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 DCST1Q5T197 706 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms