RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 INTS7Q9NVH2 962 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 SMPD4Q9NXE4 827 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 KIDINS220Q9ULH0 1771 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PPIEQ9UNP9 301 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 CYP3A7-CYP3A51PA0A087WV96 503 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 ERBB2P04626 1255 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 BDNFP23560 247 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 CYP3A7P24462 503 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 ARHGDIBP52566 201 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 S100A12P80511 92 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 POMGNT2Q8NAT1 580 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 SMG7Q92540 1137 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 ZBTB45Q96K62 511 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 SPATA5L1Q9BVQ7 753 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 POLR2J2Q9GZM3 115 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 ZNF696Q9H7X3 374 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 GPN3Q9UHW5 284 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 DEPDC5O75140 1603 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 MYPNQ86TC9 1320 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 CXCR6O00574 342 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 CLIC3O95833 236 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 IFNA6P05013 189 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 USP17L7P0C7H9 530 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 NR2F1P10589 423 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PEPDP12955 493 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 GOT1P17174 413 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 TPSB2P20231 275 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 GTF2BQ00403 316 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 ZNF45Q02386 682 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 TPSAB1Q15661 275 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 SETMARQ53H47 684 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 UNC5BQ8IZJ1 945 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 DAW1Q8N136 415 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 SYNPOQ8N3V7 929 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 UBE2E3Q969T4 207 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 ZNF486Q96H40 463 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 FTHL17Q9BXU8 183 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 MAF1Q9H063 256 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 DNAJC5Q9H3Z4 198 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 M0R036 132 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 WNT7AO00755 349 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 NARSO43776 548 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 POU2F1P14859 743 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PPIBP23284 216 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 ATP6V0D1P61421 351 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PITPNAQ00169 270 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 CBLBQ13191 982 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 KLF1Q13351 362 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 CPSF6Q16630 551 aaKnown RBP eCLIP10.33□□□□□ -0.76
VCL-201ENST00000211998 CYP1B1Q16678 543 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PLPPR4Q7Z2D5 763 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 ADGRD2Q7Z7M1 963 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 CFAP206Q8IYR0 622 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 SLC15A4Q8N697 577 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 VANGL1Q8TAA9 524 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 CEP76Q8TAP6 659 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 SUSD6Q92537 303 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 GTPBP3Q969Y2 492 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 GAL3ST3Q96A11 431 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 MAGEB10Q96LZ2 347 aaPredicted RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 C11orf16Q9NQ32 467 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 MRPL17Q9NRX2 175 aaKnown RBP10.33□□□□□ -0.76
VCL-201ENST00000211998 RAB23Q9ULC3 237 aa10.33□□□□□ -0.76
VCL-201ENST00000211998 PSMD10O75832 226 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 CATP04040 527 aaKnown RBP10.32□□□□□ -0.76
VCL-201ENST00000211998 FUT4P22083 530 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 PDHA2P29803 388 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 CD86P42081 329 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 MRPS6P82932 125 aaKnown RBP10.32□□□□□ -0.76
VCL-201ENST00000211998 RHDQ02161 417 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 MEP1AQ16819 746 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 HECTD3Q5T447 861 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 CCBE1Q6UXH8 406 aaPredicted RBP10.32□□□□□ -0.76
VCL-201ENST00000211998 KIF18BQ86Y91 864 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 IQCF2Q8IXL9 164 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 OR4A15Q8NGL6 344 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 UFD1Q92890 307 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 TMBIM1Q969X1 311 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 ZNF558Q96NG5 402 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.32□□□□□ -0.761e-9■■■□□ 16
VCL-201ENST00000211998 GMIPQ9P107 970 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 UBIAD1Q9Y5Z9 338 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 CHP2O43745 196 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 PGDP52209 483 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 VGLL4Q14135 290 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 RNF44Q7L0R7 432 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 LINGO2Q7L985 606 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 TMEM126BQ8IUX1 230 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 NETO2Q8NC67 525 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 GATAD2BQ8WXI9 593 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 KCNN2Q9H2S1 579 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 MMP27Q9H306 513 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 DPAGT1Q9H3H5 408 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 ZNF395Q9H8N7 513 aaPredicted RBP10.32□□□□□ -0.76
VCL-201ENST00000211998 EVA1BQ9NVM1 165 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 TAS2R9Q9NYW1 312 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 ZNF69Q9UC07 566 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 H3BNH8 94 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 ARPC2O15144 300 aa10.32□□□□□ -0.76
VCL-201ENST00000211998 MAFO75444 373 aaPredicted RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms