RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 PLA2G2CQ5R387 149 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 RBM20Q5T481 1227 aaKnown RBP12.12□□□□□ -0.47
LINC00339-213ENST00000642137 IL27RAQ6UWB1 636 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 LAYNQ6UX15 382 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 TIFABQ6ZNK6 161 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 RD3Q7Z3Z2 195 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 AMZ2Q86W34 360 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 GALNT13Q8IUC8 556 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 TRAPPC5Q8IUR0 188 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 RIBC1Q8N443 379 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-213ENST00000642137 DCLK2Q8N568 766 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 BEND7Q8N7W2 519 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-213ENST00000642137 GPATCH11Q8N954 259 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 OR2L2Q8NH16 312 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 MTBPQ96DY7 904 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 ELMO2Q96JJ3 720 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 OR2M4Q96R27 311 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 TIMM29Q9BSF4 260 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 SLC13A1Q9BZW2 595 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 ZDHHC5Q9C0B5 715 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 VIPAS39Q9H9C1 493 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 SPATS2LQ9NUQ6 558 aaKnown RBP12.12□□□□□ -0.47
LINC00339-213ENST00000642137 EURLQ9NYK6 297 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 TAS2R13Q9NYV9 303 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 KLF15Q9UIH9 416 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 MED16Q9Y2X0 877 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 DHRS7Q9Y394 339 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 GPSM3Q9Y4H4 160 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 PCYT1BQ9Y5K3 369 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-213ENST00000642137 SNX11Q9Y5W9 270 aa12.12□□□□□ -0.47
LINC00339-213ENST00000642137 LRP4O75096 1905 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TDRD6O60522 2096 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 HMX2A2RU54 273 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 IQCF5A8MTL0 148 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 E5RI56 91 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 H3BM21 787 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 MAP2K7O14733 419 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 LIN7AO14910 233 aaPredicted RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 KHNYNO15037 678 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 NIPSNAP2O75323 286 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 CFIP05156 583 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 CTSEP14091 401 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 NME1P15531 152 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 JUNDP17535 347 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 VCLP18206 1134 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 FDXRP22570 491 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 AOAHP28039 575 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 HNRNPKP61978 463 aaKnown RBP eCLIP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TIAL1Q01085 375 aaKnown RBP eCLIP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 PLOD1Q02809 727 aaPredicted RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 DMPKQ09013 629 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 LRP8Q14114 963 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 USP10Q14694 798 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 ZNF423Q2M1K9 1284 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TRIM61Q5EBN2 209 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 MROH9Q5TGP6 573 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 KCTD16Q68DU8 428 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 CRTC3Q6UUV7 619 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 CHST15Q7LFX5 561 aaPredicted RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 PHACTR4Q8IZ21 702 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 KRT222Q8N1A0 295 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 SDR16C5Q8N3Y7 309 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 GPBAR1Q8TDU6 330 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 EPS8L3Q8TE67 593 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 NAT14Q8WUY8 206 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 INPP5DQ92835 1189 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TSPAN17Q96FV3 270 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 PDXPQ96GD0 296 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 ATXN7L3BQ96GX2 97 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 PKNOX2Q96KN3 472 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 NDNQ99608 321 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 NUSAP1Q9BXS6 441 aaKnown RBP12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TMEM168Q9H0V1 697 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 POPDC3Q9HBV1 291 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 DNAJC28Q9NX36 388 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 SLC23A2Q9UGH3 650 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 GMEB2Q9UKD1 530 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 SLC39A10Q9ULF5 831 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 PRKAB1Q9Y478 270 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 RALGAPA1Q6GYQ0 2036 aa12.11□□□□□ -0.47
LINC00339-213ENST00000642137 TP53BP1Q12888 1972 aaPredicted RBP12.1□□□□□ -0.47
LINC00339-213ENST00000642137 SLC5A10A0PJK1 596 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 PATE3B3GLJ2 98 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 ARHGAP33O14559 1287 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 GPC4O75487 556 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 LMNAP02545 664 aaKnown RBP12.1□□□□□ -0.47
LINC00339-213ENST00000642137 ZNF806P0C7X5 589 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 STMN1P16949 149 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 ITGB6P18564 788 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 CCR7P32248 378 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 SLCO1A2P46721 670 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 CLCN7P51798 805 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 SLC12A2P55011 1212 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 CDKN2DP55273 166 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 TAS2R39P59534 338 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 IRX4P78413 519 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 CTBSQ01459 385 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 ZNF844Q08AG5 666 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 INSCQ1MX18 579 aa12.1□□□□□ -0.47
LINC00339-213ENST00000642137 HLA-BQ31612 363 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms