RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF217O75362 1048 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 DAB1O75553 588 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CREG1O75629 220 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SEC14L2O76054 403 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TMEM63AO94886 807 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 NKX2-2O95096 273 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KCNK5O95279 499 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR2C1O95371 312 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TBX18O95935 607 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ICAM1P05362 532 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CLEC3BP05452 202 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TPOP07202 933 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 IFIT1P09914 478 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 FAM157CP0CG43 387 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TRIM49P0CI25 452 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TRIM49CP0CI26 452 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ATP1A3P13637 1013 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PRLRP16471 622 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 IL7RP16871 459 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNF23P17027 643 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 POLR2CP19387 275 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ITIH1P19827 911 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MSH3P20585 1137 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MCCP23508 829 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RRM1P23921 792 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 EPHA2P29317 976 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ELF1P32519 619 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 BSGP35613 385 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 AHRP35869 848 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MAP2K2P36507 400 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GNL1P36915 607 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ARL1P40616 181 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 TSPAN7P41732 249 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ARCN1P48444 511 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 CCT5P48643 541 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GPR143P51810 404 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 THOP1P52888 689 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 EIF3BP55884 814 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 SNX16P57768 344 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 B3GALT5-AS1P59052 145 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TAS2R40P59535 323 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RPP30P78346 268 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 MRPS34P82930 218 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 SORDQ00796 357 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MBTD1Q05BQ5 628 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FOXM1Q08050 763 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PNRC1Q12796 327 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 TMEM115Q12893 351 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ELAVL2Q12926 359 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 FOXD4Q12950 439 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 CSTF3Q12996 717 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 TRPC3Q13507 836 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GTF2H2Q13888 395 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CAMK1Q14012 370 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MVPQ14764 893 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 DRAP1Q14919 205 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 KIR2DS3Q14952 304 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KIR2DS5Q14953 304 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 VEPH1Q14D04 833 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 P2RY6Q15077 328 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PPP2R5BQ15173 497 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GPR68Q15743 365 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TBCEQ15813 527 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 TSTQ16762 297 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 CCDC96Q2M329 555 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MYLK3Q32MK0 819 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PCGF3Q3KNV8 242 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KIAA1644Q3SXP7 199 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNF805Q5CZA5 627 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 LRIF1Q5T3J3 769 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FAM69AQ5T7M9 428 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 INTS11Q5TA45 600 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 GGNBP1Q5YKI7 109 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SEL1L3Q68CR1 1132 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FAM109BQ6ICB4 259 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 JADE1Q6IE81 842 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR7E24Q6IFN5 339 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GTF2H2CQ6P1K8 395 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 METTL2BQ6P1Q9 378 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 DUS1LQ6P1R4 473 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 FAM171BQ6P995 826 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 LINGO4Q6UY18 593 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNF704Q6ZNC4 412 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 GPRIN3Q6ZVF9 776 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CACNA2D4Q7Z3S7 1137 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PIWIL4Q7Z3Z4 852 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 PXKQ7Z7A4 578 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SDCCAG8Q86SQ7 713 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 GALNT13Q8IUC8 556 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CEP97Q8IW35 865 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CCDC13Q8IYE1 715 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PM20D2Q8IYS1 436 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RNF168Q8IYW5 571 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 CNTROBQ8N137 903 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ADSSL1Q8N142 457 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SCML4Q8N228 414 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RASGEF1CQ8N431 466 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ESX1Q8N693 406 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GCSAMQ8N6F7 178 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNF611Q8N823 705 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms