RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GBX1Q14549 363 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 ACSBG2Q5FVE4 666 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 TBC1D3GQ6DHY5 549 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 TBC1D3CQ6IPX1 549 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 CGB2Q6NT52 195 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 PIGWQ7Z7B1 504 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 ADGRG6Q86SQ4 1221 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 TBC1D3Q8IZP1 549 aaPredicted RBP18.15■□□□□ 0.5
CLN3-254ENST00000637050 SIX5Q8N196 739 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 TP53I13Q8NBR0 393 aaPredicted RBP18.15■□□□□ 0.5
CLN3-254ENST00000637050 FLCNQ8NFG4 579 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 HMGB4Q8WW32 186 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 GRAMD1AQ96CP6 724 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 CCDC126Q96EE4 140 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 C7orf26Q96N11 449 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 LENG8Q96PV6 779 aaPredicted RBP18.15■□□□□ 0.5
CLN3-254ENST00000637050 SLC17A9Q9BYT1 436 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 ZCCHC2Q9C0B9 1178 aaKnown RBP18.15■□□□□ 0.5
CLN3-254ENST00000637050 CD93Q9NPY3 652 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 ITM2CQ9NQX7 267 aa18.15■□□□□ 0.5
CLN3-254ENST00000637050 USP36Q9P275 1121 aaKnown RBP18.15■□□□□ 0.5
CLN3-254ENST00000637050 PRR23AA6NEV1 266 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 OR2AG2A6NM03 316 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 EIF3FO00303 357 aaPredicted RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 CDC7O00311 574 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 BTN3A1O00481 513 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 KPNA5O15131 536 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 PAK4O96013 591 aaPredicted RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 PCCBP05166 539 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 DNAJB13P59910 316 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 TSNQ15631 228 aaKnown RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 NAPRTQ6XQN6 538 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 TRIM74Q86UV6 250 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 FAM124AQ86V42 546 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 ASB12Q8WXK4 309 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 FUBP1Q96AE4 644 aaKnown RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 ELAC2Q9BQ52 826 aaKnown RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 GATA5Q9BWX5 397 aaPredicted RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 FOXQ1Q9C009 403 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 C20orf27Q9GZN8 174 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 MBNL1Q9NR56 388 aaKnown RBP18.14■□□□□ 0.49
CLN3-254ENST00000637050 THAP1Q9NVV9 213 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 EBF1Q9UH73 591 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 TRPM6Q9BX84 2022 aa18.14■□□□□ 0.49
CLN3-254ENST00000637050 PIKFYVEQ9Y2I7 2098 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 NPEPPSL1A6NEC2 478 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 NEMP2A6NFY4 417 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 A8MT66 165 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 IPO13O94829 963 aaKnown RBP18.13■□□□□ 0.49
CLN3-254ENST00000637050 CDK14O94921 469 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 IGLV3-19P01714 112 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 MTHFD2P13995 350 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 TRIM23P36406 574 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 NFKB2Q00653 900 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 ASPHQ12797 758 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 IRF4Q15306 451 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 BCL7AQ4VC05 210 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 TRIM67Q6ZTA4 783 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 PIWIL4Q7Z3Z4 852 aaKnown RBP18.13■□□□□ 0.49
CLN3-254ENST00000637050 HEATR4Q86WZ0 1026 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 KLK6Q92876 244 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 C1QTNF7Q9BXJ2 289 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 TEX101Q9BY14 249 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 ZNF395Q9H8N7 513 aaPredicted RBP18.13■□□□□ 0.49
CLN3-254ENST00000637050 C2orf42Q9NWW7 574 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 ATXN10Q9UBB4 475 aa18.13■□□□□ 0.49
CLN3-254ENST00000637050 VEGFDO43915 354 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SNX3O60493 162 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 TPBGLP0DKB5 382 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 ENO3P13929 434 aaPredicted RBP18.12■□□□□ 0.49
CLN3-254ENST00000637050 ACSL1P33121 698 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SLC1A6P48664 564 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 PPP2CBP62714 309 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 PPP2CAP67775 309 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 CDK3Q00526 305 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 PLEKHS1Q5SXH7 462 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 GKAP1Q5VSY0 366 aaPredicted RBP18.12■□□□□ 0.49
CLN3-254ENST00000637050 TMEM220Q6QAJ8 160 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 CYHR1Q6ZMK1 362 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 TRIM69Q86WT6 500 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SLC22A9Q8IVM8 553 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 MYO1HQ8N1T3 1032 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 BEND7Q8N7W2 519 aaPredicted RBP18.12■□□□□ 0.49
CLN3-254ENST00000637050 OR2T34Q8NGX1 318 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 BTBD1Q9H0C5 482 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 OR2AG1Q9H205 316 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 RNF112Q9ULX5 631 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SYCE1LA8MT33 242 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 TMEM114B3SHH9 223 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 C10orf142B7Z368 130 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 RAD51BO15315 384 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 ITM2AO43736 263 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 LILRB5O75023 590 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SMIM24O75264 130 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 ARRB2P32121 409 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 NAGLUP54802 743 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 ABCE1P61221 599 aaKnown RBP18.12■□□□□ 0.49
CLN3-254ENST00000637050 INPP5AQ14642 412 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 ZNF514Q96K75 400 aaPredicted RBP18.12■□□□□ 0.49
CLN3-254ENST00000637050 CCM2Q9BSQ5 444 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms