RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NCF1CA8MVU1 366 aaPredicted RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 AP1G1O43747 822 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 KLK8O60259 260 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SUPT7LO94864 414 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 AP2A2O94973 939 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SIX3O95343 332 aaPredicted RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 NCF1P14598 390 aaPredicted RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 AOAHP28039 575 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SERPINB3P29508 390 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 RPL14P50914 215 aaKnown RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 MLLT1Q03111 559 aaPredicted RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 DPTQ07507 201 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SMAD2Q15796 467 aaKnown RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 GALNTL6Q49A17 601 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 LACTB2Q53H82 288 aaPredicted RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 RAET1GQ6H3X3 334 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SBSNQ6UWP8 590 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 Q7L0L9 218 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 ALYREFQ86V81 257 aaKnown RBP16.61■□□□□ 0.25
CLN3-252ENST00000636907 ERP27Q96DN0 273 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 SLC6A17Q9H1V8 727 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 LRRC14BA6NHZ5 514 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 SHISA7A6NL88 538 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 TSPAN6O43657 245 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 RNASEH2AO75792 299 aaKnown RBP16.6■□□□□ 0.25
CLN3-252ENST00000636907 CBSLP0DN79 551 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 CBSP35520 551 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 GPR1P46091 355 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 CRY1Q16526 586 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 GLIPR1L2Q4G1C9 344 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 VWA5B1Q5TIE3 1220 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 CYHR1Q6ZMK1 362 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 ADAMTSL2Q86TH1 951 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 PHYKPLQ8IUZ5 450 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 BEND7Q8N7W2 519 aaPredicted RBP16.6■□□□□ 0.25
CLN3-252ENST00000636907 RASGEF1AQ8N9B8 481 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 HLA-CQ95604 372 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 DNAJC28Q9NX36 388 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 ADAMTS6Q9UKP5 1117 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.6■□□□□ 0.25
CLN3-252ENST00000636907 F5P12259 2224 aa16.6■□□□□ 0.25
CLN3-252ENST00000636907 IGLON5A6NGN9 336 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 OR2AG2A6NM03 316 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 SNUPNO95149 360 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 PCDH8O95206 1070 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TSPAN8P19075 237 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 IDH3AP50213 366 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 CTSCP53634 463 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 MRPS21P82921 87 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 ZBTB16Q05516 673 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TMEM115Q12893 351 aaPredicted RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 GBX1Q14549 363 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TGFBIQ15582 683 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 PPP1R3AQ16821 1122 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 FBXO48Q5FWF7 155 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 FRA10AC1Q70Z53 315 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TRMT11Q7Z4G4 463 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 TRIM74Q86UV6 250 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 NLRP8Q86W28 1048 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TMPRSS6Q8IU80 811 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 GBP7Q8N8V2 638 aaPredicted RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 MAPK15Q8TD08 544 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 STN1Q9H668 368 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 COG4Q9H9E3 785 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 CD248Q9HCU0 757 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 UTP6Q9NYH9 597 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 NUDT4Q9NZJ9 180 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 CD274Q9NZQ7 290 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 ZFP69BQ9UJL9 534 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TMCO1Q9UM00 188 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 STX16-NPEPL1H3BU86 382 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 MATN2O00339 956 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 STX16O14662 325 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 GRID2O43424 1007 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TM7SF2O76062 418 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 EEF1DP29692 281 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 AGTR2P50052 363 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 ALDH18A1P54886 795 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 GALNT1Q10472 559 aaPredicted RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 TUBB3Q13509 450 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 BOP1Q14137 746 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 SH2D4BQ5SQS7 431 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 CUZD1Q86UP6 607 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 ELMO1Q92556 727 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 PRR11Q96HE9 360 aaPredicted RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 RILPQ96NA2 401 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TRMOQ9BU70 441 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 FAM126AQ9BYI3 521 aaPredicted RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 FBRSQ9HAH7 460 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 EML4Q9HC35 981 aaKnown RBP16.59■□□□□ 0.25
CLN3-252ENST00000636907 TNFRSF12AQ9NP84 129 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 FBXL12Q9NXK8 326 aa16.59■□□□□ 0.25
CLN3-252ENST00000636907 TMEM233B4DJY2 109 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 EIF3FO00303 357 aaPredicted RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 QSOX1O00391 747 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 UBFD1O14562 309 aaKnown RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 SNX2O60749 519 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 DIAPH2O60879 1101 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 FTH1P02794 183 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 DNTTP04053 509 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms