RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ACTR5Q9H9F9 607 aaPredicted RBP14.19□□□□□ -0.14
CLN3-249ENST00000636685 P4HTMQ9NXG6 502 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 F8VZ95 297 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 PEX12O00623 359 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 CHUKO15111 745 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 ZBTB11O95625 1053 aaPredicted RBP14.18□□□□□ -0.14
CLN3-249ENST00000636685 CD1EP15812 388 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 GSCP56915 257 aaPredicted RBP14.18□□□□□ -0.14
CLN3-249ENST00000636685 OTUD4Q01804 1114 aaKnown RBP14.18□□□□□ -0.14
CLN3-249ENST00000636685 IHHQ14623 411 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 SSPNQ14714 243 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 ZNF169Q14929 603 aaPredicted RBP14.18□□□□□ -0.14
CLN3-249ENST00000636685 PLCL1Q15111 1095 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 RALGPS1Q5JS13 557 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 TMTC4Q5T4D3 741 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 AGAP9Q5VTM2 703 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 WASH2PQ6VEQ5 465 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 LRRTM4Q86VH4 590 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 ZNF677Q86XU0 584 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 OR1L3Q8NH93 324 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 HDAC11Q96DB2 347 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 CNDP1Q96KN2 507 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 TIGD1Q96MW7 591 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 CD180Q99467 661 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 TIMM29Q9BSF4 260 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 CNPY3Q9BT09 278 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 TRIM39Q9HCM9 518 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 OLAHQ9NV23 265 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 SOHLH2Q9NX45 425 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 CHKBQ9Y259 395 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 PADI2Q9Y2J8 665 aa14.18□□□□□ -0.14
CLN3-249ENST00000636685 NCOA6Q14686 2063 aaPredicted RBP14.18□□□□□ -0.14
CLN3-249ENST00000636685 TRGV8A0A0C4DH27 118 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 TCRBV5S1A1TA0A578 114 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 CCDC78A2IDD5 438 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 OR5K3A6NET4 321 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 C9J4A7 227 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 KMOO15229 486 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 GFPT2O94808 682 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 SLC25A14O95258 325 aaPredicted RBP14.17□□□□□ -0.14
CLN3-249ENST00000636685 ATXN8OSP0DMR3 200 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 UNGP13051 313 aaPredicted RBP14.17□□□□□ -0.14
CLN3-249ENST00000636685 IDSP22304 550 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 MMP13P45452 471 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 SOX8P57073 446 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 OGDHQ02218 1023 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 ZNF789Q5FWF6 425 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 PPP6R3Q5H9R7 873 aaPredicted RBP14.17□□□□□ -0.14
CLN3-249ENST00000636685 DNAJC24Q6P3W2 148 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 KLHL35Q6PF15 583 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 FAM180AQ6UWF9 173 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 ZNF547Q8IVP9 402 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 BBS5Q8N3I7 341 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.17□□□□□ -0.14
CLN3-249ENST00000636685 GBP5Q96PP8 586 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 SNRNP25Q9BV90 132 aaKnown RBP14.17□□□□□ -0.14
CLN3-249ENST00000636685 NT5MQ9NPB1 228 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 PTRH2Q9Y3E5 179 aaKnown RBP14.17□□□□□ -0.14
CLN3-249ENST00000636685 NEU2Q9Y3R4 380 aa14.17□□□□□ -0.14
CLN3-249ENST00000636685 PRRC2AP48634 2157 aaKnown RBP14.16□□□□□ -0.14
CLN3-249ENST00000636685 C1orf232A0A0U1RR37 186 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 ANKRD62A6NC57 917 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 TMEM150CB9EJG8 249 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 CCL21O00585 134 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 MAFKO60675 156 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 MTX2O75431 263 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 IGHEP01854 428 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 CD99P14209 185 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 UCHL3P15374 230 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 HADHAP40939 763 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 NSFP46459 744 aaKnown RBP14.16□□□□□ -0.14
CLN3-249ENST00000636685 ARCN1P48444 511 aaKnown RBP14.16□□□□□ -0.14
CLN3-249ENST00000636685 FOXL2P58012 376 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 SMTNL2Q2TAL5 461 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 ZNF569Q5MCW4 686 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 MLIPQ5VWP3 458 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 B3GNTL1Q67FW5 361 aaPredicted RBP14.16□□□□□ -0.14
CLN3-249ENST00000636685 TMEM151BQ8IW70 566 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 HSCBQ8IWL3 235 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 RAVER1Q8IY67 606 aaKnown RBP14.16□□□□□ -0.14
CLN3-249ENST00000636685 BCORP1Q8N888 145 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 PEBP4Q96S96 227 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 TMUB1Q9BVT8 246 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 SPATA16Q9BXB7 569 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 STK33Q9BYT3 514 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 FANCEQ9HB96 536 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 ATP13A2Q9NQ11 1180 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 HRASLS2Q9NWW9 162 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 PKD2L2Q9NZM6 624 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 PCSK1NQ9UHG2 260 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 DNPEPQ9ULA0 475 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 BTRCQ9Y297 605 aa14.16□□□□□ -0.14
CLN3-249ENST00000636685 MAP1AP78559 2803 aaPredicted RBP14.15□□□□□ -0.14
CLN3-249ENST00000636685 GPR89AB7ZAQ6 455 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 PCDH17O14917 1159 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ALOX12BO75342 701 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 PRLP01236 227 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 CALB1P05937 261 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 GPR89BP0CG08 455 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 CYP2A7P20853 494 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms