RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CERS2Q96G23 380 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 CAMK1GQ96NX5 476 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 FMO2Q99518 471 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 DPEP2Q9H4A9 486 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 IARS2Q9NSE4 1012 aaKnown RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 NCKIPSDQ9NZQ3 722 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 DNAJC16Q9Y2G8 782 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 COL5A1P20908 1838 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 UBA6A0AVT1 1052 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 OR1I1O60431 355 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 FTH1P02794 183 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 GSTM1P09488 218 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 GIMD1P0DJR0 217 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 ERVK-10P10266 1014 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 PBLDP30039 288 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 MAGEA4P43358 317 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 RPIAP49247 311 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 CARSP49589 748 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 GSTM4Q03013 218 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 FRG1Q14331 258 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 C11orf96Q7Z7L8 435 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 BEND7Q8N7W2 519 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 PNPLA1Q8N8W4 532 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 FAM181AQ8N9Y4 354 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 NAT14Q8WUY8 206 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 CNDP2Q96KP4 475 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 LINC00615Q96LM1 132 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 TSSK1BQ9BXA7 367 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 INTS10Q9NVR2 710 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 SIRPGQ9P1W8 387 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 SLC23A2Q9UGH3 650 aa18.8■□□□□ 0.6
SQSTM1-216ENST00000626660 MGAT4DA6NG13 374 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 B4DGG1 531 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 TM4SF5O14894 197 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 SGTAO43765 313 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 SNX2O60749 519 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 CBFA2T3O75081 653 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 GSTA2P09210 222 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 SLC2A4P14672 509 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 IDSP22304 550 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 RPS3P23396 243 aaKnown RBP eCLIP18.79■□□□□ 0.61e-12■■■■□ 19.4
SQSTM1-216ENST00000626660 DUSP3P51452 185 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 DAB2P98082 770 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 PTRHD1Q6GMV3 140 aaKnown RBP18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 CAPN12Q6ZSI9 719 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 UNC5BQ8IZJ1 945 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 ARL10Q8N8L6 244 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 ZDHHC1Q8WTX9 485 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 APOLD1Q96LR9 279 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 CCM2Q9BSQ5 444 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 PLAC1Q9HBJ0 212 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 SPATS2LQ9NUQ6 558 aaKnown RBP18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 DLL3Q9NYJ7 618 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 GULP1Q9UBP9 304 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 GNPTGQ9UJJ9 305 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 FBXO5Q9UKT4 447 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 ST14Q9Y5Y6 855 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 PRSS21Q9Y6M0 314 aa18.79■□□□□ 0.6
SQSTM1-216ENST00000626660 PDZK1P1A8MUH7 402 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 SLC1A2P43004 574 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 EIF3BP55884 814 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 DMPKQ09013 629 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 MGAT5Q09328 741 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 CTBP1Q13363 440 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 NR0B2Q15466 257 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 PROX2Q3B8N5 592 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 ZNF449Q6P9G9 518 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 KIAA0408Q6ZU52 694 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 DENND6AQ8IWF6 608 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 OR2L2Q8NH16 312 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 BAHD1Q8TBE0 780 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 HM13Q8TCT9 377 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 LPGAT1Q92604 370 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 C9orf72Q96LT7 481 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 ZFATQ9P243 1243 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 FAM8A1Q9UBU6 413 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 NFU1Q9UMS0 254 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 PCDHB1Q9Y5F3 818 aa18.78■□□□□ 0.6
SQSTM1-216ENST00000626660 C17orf113A0A1B0GUU1 675 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 H3BMM5 538 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 TNFSF14O43557 240 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 SPAG6O75602 509 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 S1PR4O95977 384 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 CEACAM1P13688 526 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 NOVA1P51513 510 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 TRIP6Q15654 476 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 TRMT10BQ6PF06 316 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 OGFOD3Q6PK18 319 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 CNTN4Q8IWV2 1026 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 SLC35F3Q8IY50 421 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 KYQ8NBH2 561 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 PANX3Q96QZ0 392 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 CCDC68Q9H2F9 335 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 FBXO6Q9NRD1 293 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 TBC1D29Q9UFV1 150 aa18.77■□□□□ 0.6
SQSTM1-216ENST00000626660 DMXL1Q9Y485 3027 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 OR5K4A6NMS3 321 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 ESR1P03372 595 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 F3P13726 295 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 CKMT2P17540 419 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms