RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ABCB1P08183 1280 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 CDH1P12830 882 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 RHOQP17081 205 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ARNTP27540 789 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 HALP42357 657 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 RXRGP48443 463 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ALDH3A2P51648 485 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 CLCN2P51788 898 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 LRRC74AQ0VAA2 488 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ATP6AP1Q15904 470 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SYT16Q17RD7 645 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 MARCH8Q5T0T0 291 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 LCN8Q6JVE9 175 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ZNF549Q6P9A3 640 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 AFTPHQ6ULP2 937 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 CYP20A1Q6UW02 462 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 PHACTR4Q8IZ21 702 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 TSGA13Q96PP4 275 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 APOL4Q9BPW4 351 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 TFB2MQ9H5Q4 396 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 C8orf4Q9NR00 106 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 OLA1Q9NTK5 396 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 GIN1Q9NXP7 522 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SAMHD1Q9Y3Z3 626 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 SCN1AP35498 2009 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 FAM234BA2RU67 622 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 hCG_2039718K7EN88 272 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ABCB7O75027 752 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SNAI1O95863 264 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 MYCLP1P12525 358 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 HSD17B1P14061 328 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 MATN1P21941 496 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 IGFBP5P24593 272 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 VARSP26640 1264 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 CREB5Q02930 508 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SLC36A3Q495N2 470 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ZCCHC8Q6NZY4 707 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 RNF19BQ6ZMZ0 732 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 DCDC5Q6ZRR9 648 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 TICAM1Q8IUC6 712 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 PELI3Q8N2H9 469 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 IRGQQ8WZA9 623 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 AURKBQ96GD4 344 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 RBM4BQ9BQ04 359 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 HERC2P3Q9BVR0 1158 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 RBM4Q9BWF3 364 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 ADGRE3Q9BY15 652 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 WDR12Q9GZL7 423 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 FBXO44Q9H4M3 255 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 GNPTGQ9UJJ9 305 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 PCDHB3Q9Y5E6 796 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 GREB1LQ9C091 1923 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 ARVCFO00192 962 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 GABRDO14764 452 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ASNA1O43681 348 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 CNMDO75829 334 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 LPOP22079 712 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 DNAJB1P25685 340 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 VBP1P61758 197 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 NFE2Q16621 373 aaPredicted RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 C6orf136Q5SQH8 315 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SULT1C3Q6IMI6 304 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 LINGO4Q6UY18 593 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SYVN1Q86TM6 617 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 MON1AQ86VX9 555 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 P2RY8Q86VZ1 359 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 ARHGAP12Q8IWW6 846 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 EEF1AKMT1Q8WVE0 214 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 SELENOMQ8WWX9 145 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 MAELQ96JY0 434 aaKnown RBP12.45□□□□□ -0.42
LIG1-221ENST00000613670 RMND5AQ9H871 391 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 AASSQ9UDR5 926 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 CD300AQ9UGN4 299 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 PCDHB9Q9Y5E1 797 aa12.45□□□□□ -0.42
LIG1-221ENST00000613670 FZD9O00144 591 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 CXCR6O00574 342 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TBX1O43435 398 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 DFNA5O60443 496 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 KERAO60938 352 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 GPR32O75388 356 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 NDST3O95803 873 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 GDF5P43026 501 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 GPR15P49685 360 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 RHOAP61586 193 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TOP3AQ13472 1001 aaPredicted RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 PTGR1Q14914 329 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TMEM236Q5W0B7 351 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 DENND5AQ6IQ26 1287 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SZRD1Q7Z422 152 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 NANOGNBQ7Z5D8 188 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 RASAL3Q86YV0 1011 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 OR52B6Q8NGF0 335 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 CNIH3Q8TBE1 160 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 BRSK1Q8TDC3 778 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 KCNN1Q92952 543 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 ITCHQ96J02 903 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 PPP3R2Q96LZ3 170 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MIR1-1HGQ9H1L0 117 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MUC13Q9H3R2 512 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MIOSQ9NXC5 875 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms