RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EQTNQ9NQ60 294 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 RAPGEFL1Q9UHV5 662 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 DMTF1Q9Y222 760 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 TRAF6Q9Y4K3 522 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 OR5F1O95221 314 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 IL12RB1P42701 662 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 CCNIQ14094 377 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 RHBDF2Q6PJF5 856 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 PRSS55Q6UWB4 352 aaPredicted RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 LRRC55Q6ZSA7 311 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 LRRTM4Q86VH4 590 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 SERPINA9Q86WD7 417 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 XYLT1Q86Y38 959 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 BRI3BPQ8WY22 251 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 EFCAB11Q9BUY7 163 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 TBL1XR1Q9BZK7 514 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 PRPF19Q9UMS4 504 aaKnown RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 ILVBLA1L0T0 632 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 DCLK1O15075 740 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 MPZL2O60487 215 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 KCNJ5P48544 419 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 PLA2G15Q8NCC3 412 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 FAM13CQ8NE31 585 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 TRAPPC9Q96Q05 1148 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 BTRCQ9Y297 605 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 PTGES3LE9PB15 166 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 AP2A1O95782 977 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 CHRNA1P02708 482 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 VBP1P61758 197 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 EARS2Q5JPH6 523 aaKnown RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 C16orf46Q6P387 395 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 KBTBD6Q86V97 674 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 BAP1Q92560 729 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 EPYCQ99645 322 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 KMOO15229 486 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 CCR8P51685 355 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 CYP4F8P98187 520 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 ADGRF1Q5T601 910 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 MBOAT1Q6ZNC8 495 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 ZSCAN4Q8NAM6 433 aaPredicted RBP20.25■□□□□ 0.83
UPF1-207ENST00000599848 RFKQ969G6 155 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 SLC2A11Q9BYW1 496 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 SFXN1Q9H9B4 322 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 GLS2Q9UI32 602 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 MAFFQ9ULX9 164 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 TCAF1Q9Y4C2 921 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 SQORQ9Y6N5 450 aa20.25■□□□□ 0.83
UPF1-207ENST00000599848 SOWAHBA6NEL2 793 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 WRBO00258 174 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 CST1P01037 141 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 IFNW1P05000 195 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 TCF4P15884 667 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 OXTRP30559 389 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 ZCCHC23Q6ZST2 131 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 FAM129CQ86XR2 697 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 C11orf65Q8NCR3 313 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 OVCA2Q8WZ82 227 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 IL25Q9H293 177 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 SUV39H2Q9H5I1 410 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 CCDC162PA2VCL2 907 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 KHDRBS3O75525 346 aaKnown RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 CD2P06729 351 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 ELOCQ15369 112 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 TCHHL1Q5QJ38 904 aaPredicted RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 SPESP1Q6UW49 350 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 KLHDC7BQ96G42 594 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 NUSAP1Q9BXS6 441 aaKnown RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 RNF121Q9H920 327 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 COX4I1P13073 169 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 ZBTB10Q96DT7 871 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 TTYH1Q9H313 450 aaPredicted RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 HAT1O14929 419 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 SLC7A4O43246 635 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 CCNE2O96020 404 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 SLC26A3P40879 764 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 NRIP1P48552 1158 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 C1QTNF8P60827 252 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 TAC4Q86UU9 113 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 ZCCHC10Q8TBK6 192 aa20.24■□□□□ 0.83
UPF1-207ENST00000599848 EXOSC8Q96B26 276 aaKnown RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 RGS17Q9UGC6 210 aaPredicted RBP20.24■□□□□ 0.83
UPF1-207ENST00000599848 A0A1W2PRU2 124 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 B4DGG1 531 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 CASP5P51878 434 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 C12orf40Q86WS4 652 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 OR2T12Q8NG77 320 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 C8orf33Q9H7E9 229 aaPredicted RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 MGAT4AQ9UM21 535 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 PADI2Q9Y2J8 665 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 PCDHGB7Q9Y5F8 929 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 GPC6Q9Y625 555 aaPredicted RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 FZD9O00144 591 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 NPC1O15118 1278 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 RENP00797 406 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 TRIM25Q14258 630 aaKnown RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 PTCHD4Q6ZW05 846 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 FATE1Q969F0 183 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 CAMK1GQ96NX5 476 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms