RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ATP6V0D1P61421 351 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 YPEL5P62699 121 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 TIAL1Q01085 375 aaKnown RBP eCLIP15.22■□□□□ 0.03
UPF1-206ENST00000598471 RPL6Q02878 288 aaKnown RBP15.22■□□□□ 0.03
UPF1-206ENST00000598471 CSHL1Q14406 222 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 SYTL3Q4VX76 610 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 PLEKHS1Q5SXH7 462 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 N4BP2L1Q5TBK1 243 aaPredicted RBP15.22■□□□□ 0.03
UPF1-206ENST00000598471 PAQR3Q6TCH7 311 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 C11orf74Q86VG3 221 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 CENPLQ8N0S6 344 aaPredicted RBP15.22■□□□□ 0.03
UPF1-206ENST00000598471 FAM160A2Q8N612 972 aaPredicted RBP15.22■□□□□ 0.03
UPF1-206ENST00000598471 CCDC63Q8NA47 563 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 LKAAEAR1Q8TD35 194 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 MGARPQ8TDB4 240 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 DYDC1Q8WWB3 177 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 ELMO1Q92556 727 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 FAM111AQ96PZ2 611 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 CCM2Q9BSQ5 444 aa15.22■□□□□ 0.03
UPF1-206ENST00000598471 RUVBL2Q9Y230 463 aaKnown RBP15.22■□□□□ 0.03
UPF1-206ENST00000598471 A0A1W2PPC4 97 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 CCDC189A1A4V9 331 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 KLHL33A6NCF5 533 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 METTL12A8MUP2 240 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 MEI4A8MW99 385 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 DNAJC6O75061 913 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 RBP1P09455 135 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 ZNF8P17098 575 aaPredicted RBP15.21■□□□□ 0.03
UPF1-206ENST00000598471 RABIFP47224 123 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 PGGT1BP53609 377 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 CTSCP53634 463 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 NFATC4Q14934 902 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 ACAP2Q15057 778 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 LVRNQ6Q4G3 990 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 GCNT7Q6ZNI0 430 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 CDHR3Q6ZTQ4 885 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 LRRTM4Q86VH4 590 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 TAX1BP1Q86VP1 789 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 WDR5BQ86VZ2 330 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 C1orf210Q8IVY1 113 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 CPNE9Q8IYJ1 553 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 MYO1HQ8N1T3 1032 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 PLD6Q8N2A8 252 aaKnown RBP15.21■□□□□ 0.03
UPF1-206ENST00000598471 GIMAP7Q8NHV1 300 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 MDM1Q8TC05 714 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 DENND1AQ8TEH3 1009 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 NAT14Q8WUY8 206 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 ASZ1Q8WWH4 475 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 NXNL1Q96CM4 212 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 LINGO1Q96FE5 620 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 UBXN10Q96LJ8 280 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 LINC00615Q96LM1 132 aaPredicted RBP15.21■□□□□ 0.03
UPF1-206ENST00000598471 PAIP2Q9BPZ3 127 aaKnown RBP15.21■□□□□ 0.03
UPF1-206ENST00000598471 LGR4Q9BXB1 951 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 DERL2Q9GZP9 239 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 IGSF5Q9NSI5 407 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 SLC17A7Q9P2U7 560 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 TMEM98Q9Y2Y6 226 aa15.21■□□□□ 0.03
UPF1-206ENST00000598471 DNMT3AQ9Y6K1 912 aaPredicted RBP15.21■□□□□ 0.03
UPF1-206ENST00000598471 NUMA1Q14980 2115 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 KMOO15229 486 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 SGTAO43765 313 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 NUAK1O60285 661 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 PLIN3O60664 434 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 TOP3BO95985 862 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 CD27P26842 260 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 AOAHP28039 575 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 THOP1P52888 689 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 CLDN2P57739 230 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 PFN3P60673 137 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 IL9RQ01113 521 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 PLOD1Q02809 727 aaPredicted RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 BOP1Q14137 746 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 MPP2Q14168 576 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 TUBB8Q3ZCM7 444 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 TMEM207Q6UWW9 146 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 LONP2Q86WA8 852 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 FRMD1Q8N878 549 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 DTWD2Q8NBA8 298 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 TMEM145Q8NBT3 493 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 ARMC2Q8NEN0 867 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 RDH11Q8TC12 318 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 ANKRD49Q8WVL7 239 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 SREK1Q8WXA9 508 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 TMEM159Q96B96 161 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 PDLIM5Q96HC4 596 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 WDR92Q96MX6 357 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 SLC30A3Q99726 388 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 MRPL57Q9BQC6 102 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 MRPL46Q9H2W6 279 aaKnown RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 TMEM216Q9P0N5 145 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 GALPQ9UBC7 116 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 MBD1Q9UIS9 605 aaPredicted RBP15.2■□□□□ 0.02
UPF1-206ENST00000598471 INVSQ9Y283 1065 aa15.2■□□□□ 0.02
UPF1-206ENST00000598471 BPTFQ12830 3046 aa15.19■□□□□ 0.02
UPF1-206ENST00000598471 CUL9Q8IWT3 2517 aa15.19■□□□□ 0.02
UPF1-206ENST00000598471 C17orf113A0A1B0GUU1 675 aa15.19■□□□□ 0.02
UPF1-206ENST00000598471 POM121BA6NF01 834 aa15.19■□□□□ 0.02
UPF1-206ENST00000598471 LIN7AO14910 233 aaPredicted RBP15.19■□□□□ 0.02
UPF1-206ENST00000598471 CHUKO15111 745 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms