RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TMEM63AO94886 807 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 CPNE6O95741 557 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 XRCC1P18887 633 aaPredicted RBP13.6□□□□□ -0.23
UPF1-205ENST00000598209 CD1CP29017 333 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 SLC19A1P41440 591 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 PRLHRP49683 370 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 INHBCP55103 352 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 PRAMEP78395 509 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 PPP1R7Q15435 360 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 C3orf38Q5JPI3 329 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 NKAIN2Q5VXU1 208 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 USP53Q70EK8 1073 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 TMPRSS9Q7Z410 1059 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 PIM3Q86V86 326 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 TRIM48Q8IWZ4 208 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 OR6P1Q8NGX9 317 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 OR2L2Q8NH16 312 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 LINC00615Q96LM1 132 aaPredicted RBP13.6□□□□□ -0.23
UPF1-205ENST00000598209 TMEM74Q96NL1 305 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 RDH14Q9HBH5 336 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 EPB41L5Q9HCM4 733 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 SYBUQ9NX95 663 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 ZNF624Q9P2J8 865 aaPredicted RBP13.6□□□□□ -0.23
UPF1-205ENST00000598209 DKK4Q9UBT3 224 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 WDR37Q9Y2I8 494 aa13.6□□□□□ -0.23
UPF1-205ENST00000598209 KLHL33A6NCF5 533 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 OR52A4PA6NMU1 304 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 TMX2-CTNND1H3BSU7 103 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 BRINP1O60477 761 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 VIPP01282 170 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 MPOP05164 745 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 NMBRP28336 390 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CCKBRP32239 447 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 HALP42357 657 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 PAFAH1B1P43034 410 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 PPM1FP49593 454 aaPredicted RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 GABREP78334 506 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 GPLD1P80108 840 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 ZFP36L1Q07352 338 aaKnown RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 ITIH4Q14624 930 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CLCA4Q14CN2 919 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CLPPQ16740 277 aaPredicted RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 METRNLQ641Q3 311 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CAND1Q86VP6 1230 aaKnown RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 OR4L1Q8NH43 312 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 OR10G6Q8NH81 332 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CXorf40BQ96DE9 158 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 LIN37Q96GY3 246 aaPredicted RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 AHCYL2Q96HN2 611 aaKnown RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 NUDT22Q9BRQ3 303 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 STRADBQ9C0K7 418 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 POLR1BQ9H9Y6 1135 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 MRM3Q9HC36 420 aaKnown RBP13.59□□□□□ -0.23
UPF1-205ENST00000598209 TREX1Q9NSU2 369 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 FAM8A1Q9UBU6 413 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 PCYOX1Q9UHG3 505 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 ZMIZ1Q9ULJ6 1067 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 PSMD13Q9UNM6 376 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 SATB2Q9UPW6 733 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 ACACAQ13085 2346 aa13.59□□□□□ -0.23
UPF1-205ENST00000598209 CCDC187A0A096LP49 1063 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 A0A1W2PNU3 283 aaPredicted RBP13.58□□□□□ -0.24
UPF1-205ENST00000598209 GOLGA8MH3BSY2 632 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 TAF4O00268 1085 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 DUX1O43812 170 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 AVILO75366 819 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 AP2A2O94973 939 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 CSF2RBP32927 897 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 NSG1P42857 185 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 PTGIRP43119 386 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 LSSP48449 732 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 EPHA4P54764 986 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 SQSTM1Q13501 440 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 PTK6Q13882 451 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 FASTKD1Q53R41 847 aaKnown RBP13.58□□□□□ -0.24
UPF1-205ENST00000598209 LYPLAL1Q5VWZ2 237 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 XKR5Q6UX68 686 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 PACS1Q6VY07 963 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 TMEM26Q6ZUK4 368 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 PROSER1Q86XN7 944 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 SLITRK4Q8IW52 837 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 KLHL7Q8IXQ5 586 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 MPP5Q8N3R9 675 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 CLDN19Q8N6F1 224 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 MCUQ8NE86 351 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 WDR36Q8NI36 951 aaKnown RBP13.58□□□□□ -0.24
UPF1-205ENST00000598209 HM13Q8TCT9 377 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 SLCO2A1Q92959 643 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 SGSM3Q96HU1 749 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 TTC1Q99614 292 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 CCM2Q9BSQ5 444 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 KIFC1Q9BW19 673 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 TBC1D10AQ9BXI6 508 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 ZMYND15Q9H091 742 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 SEMA6CQ9H3T2 930 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 VPS37BQ9H9H4 285 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 UCK1Q9HA47 277 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 CATSPERZQ9NTU4 200 aa13.58□□□□□ -0.24
UPF1-205ENST00000598209 POT1Q9NUX5 634 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms