RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 UBAP1Q9NZ09 502 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 TMEM9Q9P0T7 183 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 SCHIP1Q9P0W5 487 aaPredicted RBP4.14□□□□□ -1.75
LIG3-211ENST00000588713 PAK5Q9P286 719 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 DEC1Q9P2X7 70 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 PISDQ9UG56 409 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 XPO7Q9UIA9 1087 aaKnown RBP4.14□□□□□ -1.75
LIG3-211ENST00000588713 GNPTGQ9UJJ9 305 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 CNTN6Q9UQ52 1028 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 B3GNT3Q9Y2A9 372 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 FADS3Q9Y5Q0 445 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 STAB1Q9NY15 2570 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 CROCCQ5TZA2 2017 aa4.14□□□□□ -1.75
LIG3-211ENST00000588713 PRAMEF33A0A0G2JMD5 474 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CPED1A4D0V7 1026 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 C2orf78A6NCI8 922 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM191CA6NGB0 347 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 FAM159BA6NKW6 160 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 C3orf70A6NLC5 250 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 SFI1A8K8P3 1242 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RNF212BA8MTL3 300 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM114B3SHH9 223 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 GOLGA8TH3BQL2 631 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 BOLA2-SMG1P6H3BVE0 249 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 APOC4-APOC2K7ER74 178 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 LEFTY2O00292 366 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CASC3O15234 703 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PRAMEF10O60809 474 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 DKC1O60832 514 aaKnown RBP eCLIP4.13□□□□□ -1.75
LIG3-211ENST00000588713 SIN3BO75182 1162 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TULP3O75386 442 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 BANF1O75531 89 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SERPINB7O75635 380 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RFPL1O75677 317 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ZNF189O75820 626 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 ESRRBO95718 433 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 IFNB1P01574 187 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 APOC2P02655 101 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM191BP0C7N4 346 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 JMJD7P0C870 316 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CKMT1AP12532 417 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 BMP4P12644 408 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 COX4I1P13073 169 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 COX6B1P14854 86 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ETS1P14921 441 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ZNF24P17028 368 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 KLK2P20151 261 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TPSB2P20231 275 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ACO1P21399 889 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PCSK6P29122 969 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CDH5P33151 784 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 RPL22P35268 128 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PTGER4P35408 488 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 UGT1A5P35504 534 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ELK3P41970 407 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 MAGEA3P43357 314 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 HARS2P49590 506 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 GPR15P49685 360 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RARRES1P49788 294 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 EPHB1P54762 984 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RPS3AP61247 264 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 YWHAGP61981 247 aaKnown RBP eCLIP4.13□□□□□ -1.75
LIG3-211ENST00000588713 YWHAZP63104 245 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 SLC25A3Q00325 362 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 OTUD4Q01804 1114 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 RELAQ04206 551 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CUL2Q13617 745 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 FLOT2Q14254 428 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RFTN1Q14699 578 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PSMD6Q15008 389 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 NOMO1Q15155 1222 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PCBP1Q15365 356 aaKnown RBP eCLIP4.13□□□□□ -1.75
LIG3-211ENST00000588713 TPSAB1Q15661 275 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 INSCQ1MX18 579 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 DEFB109BQ30KR1 87 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ANO4Q32M45 955 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SLC39A12Q504Y0 691 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 LY6G5CQ5SRR4 150 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TEDDM1Q5T9Z0 273 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SDHAF4Q5VUM1 108 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 METTL21CQ5VZV1 264 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 KAZNQ674X7 775 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 NIPAL1Q6NVV3 410 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM53Q6P2H8 277 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 C1orf229Q6ZS94 237 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 RFX8Q6ZV50 586 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CBWD2Q8IUF1 395 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 NUDCD3Q8IVD9 361 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ETFBKMTQ8IXQ9 262 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 DEFB107AQ8IZN7 70 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PGAM4Q8N0Y7 254 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SCAIQ8N9R8 606 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 MINDY2Q8NBR6 621 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TSPAN14Q8NG11 270 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PPP1R14CQ8TAE6 165 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 GSDMBQ8TAX9 411 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ACTL9Q8TC94 416 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CHPT1Q8WUD6 406 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 NUDT8Q8WV74 236 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SREK1Q8WXA9 508 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms