RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PPP1R3AQ16821 1122 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 TRMT5Q32P41 509 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 ACSBG2Q5FVE4 666 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 CLEC6AQ6EIG7 209 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ANKRD54Q6NXT1 300 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 C16orf89Q6UX73 402 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 LARP4Q71RC2 724 aaKnown RBP eCLIP13.98□□□□□ -0.17
LIG3-205ENST00000585941 HSD11B1LQ7Z5J1 315 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 DSG4Q86SJ6 1040 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 YAF2Q8IY57 180 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 TERB1Q8NA31 727 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 FBXO27Q8NI29 283 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 LKAAEAR1Q8TD35 194 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 TWIST2Q8WVJ9 160 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 PPP1R16AQ96I34 528 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ZFYVE19Q96K21 471 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 NSUN5Q96P11 429 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 ZNF382Q96SR6 550 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 THTPAQ9BU02 230 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 NSUN3Q9H649 340 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 IGFLR1Q9H665 355 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 DCLRE1BQ9H816 532 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 SEMA4BQ9NPR2 832 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 DNAJC15Q9Y5T4 150 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 MUC22E2RYF6 1773 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 LRRC14BA6NHZ5 514 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 NCF1BA6NI72 391 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 NCF1CA8MVU1 366 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 PRRT4C9JH25 899 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 KPNA3O00505 521 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 E2F3O00716 465 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ENO2P09104 434 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 NCF1P14598 390 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 ITGB6P18564 788 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 TSPAN8P19075 237 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 AKT1P31749 480 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 SLC6A11P48066 632 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 STX1BP61266 288 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 B4GALNT1Q00973 533 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ELAVL3Q14576 367 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 RBBP7Q16576 425 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 LRRC73Q5JTD7 316 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 LDLRAP1Q5SW96 308 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 PLEKHS1Q5SXH7 462 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 HENMT1Q5T8I9 393 aaKnown RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 TMEM198Q66K66 360 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 SULT1C3Q6IMI6 304 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 GPRIN3Q6ZVF9 776 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 NUDT18Q6ZVK8 323 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 SNX32Q86XE0 403 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 ULK2Q8IYT8 1036 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 DDHD1Q8NEL9 900 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 NXPE3Q969Y0 559 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 CCDC97Q96F63 343 aaPredicted RBP13.98□□□□□ -0.17
LIG3-205ENST00000585941 FAM161BQ96MY7 647 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 VPS35Q96QK1 796 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 RNPEPL1Q9HAU8 725 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 HPS4Q9NQG7 708 aa13.98□□□□□ -0.17
LIG3-205ENST00000585941 DOCK8Q8NF50 2099 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 FTH1P02794 183 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 C8GP07360 202 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 ELFN1P0C7U0 828 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 MPC1LP0DKB6 136 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 AOAHP28039 575 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 AGTR2P50052 363 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 RALGDSQ12967 914 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 RUNX3Q13761 415 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 GBX1Q14549 363 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 ATAT1Q5SQI0 421 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 C9orf64Q5T6V5 341 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 TANGO2Q6ICL3 276 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 VITQ6UXI7 678 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 LIPIQ6XZB0 460 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 CYHR1Q6ZMK1 362 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 RFLNAQ6ZTI6 216 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 Q6ZVL8 140 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 PARS2Q7L3T8 475 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 CYP2U1Q7Z449 544 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 TECPR1Q7Z6L1 1165 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 ENDOVQ8N8Q3 282 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 KYQ8NBH2 561 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 UBTD2Q8WUN7 234 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 TRIM54Q9BYV2 358 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 EFCAB1Q9HAE3 211 aa13.97□□□□□ -0.17
LIG3-205ENST00000585941 UTP6Q9NYH9 597 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 EIF2B4Q9UI10 523 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 PTBP2Q9UKA9 531 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 PRPF19Q9UMS4 504 aaKnown RBP13.97□□□□□ -0.17
LIG3-205ENST00000585941 CEP290O15078 2479 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 MEI4A8MW99 385 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 PSMD12O00232 456 aaPredicted RBP13.96□□□□□ -0.17
LIG3-205ENST00000585941 PIP5K1BO14986 540 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 NUAK1O60285 661 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 PEX11AO75192 247 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 OTCP00480 354 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 MSH3P20585 1137 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 ITGAXP20702 1163 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 PIK3CGP48736 1102 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 ACADVLP49748 655 aa13.96□□□□□ -0.17
LIG3-205ENST00000585941 SLC25A3Q00325 362 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms