RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TNFSF9P41273 254 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 CASP3P42574 277 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ASMTP46597 345 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 HNMTP50135 292 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 CLCN4P51793 760 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LUMP51884 338 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 NDUFA8P51970 172 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 PRAMEP78395 509 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 KCNC3Q14003 757 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ICAM4Q14773 271 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 CLCA4Q14CN2 919 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 NAB2Q15742 525 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ZBTB6Q15916 424 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 MEP1BQ16820 701 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 KNOP1Q1ED39 458 aaKnown RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 GALNTL6Q49A17 601 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LIN9Q5TKA1 542 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 JADE1Q6IE81 842 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 KLHL35Q6PF15 583 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 MEX3BQ6ZN04 569 aaKnown RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 C15orf39Q6ZRI6 1047 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LINC00696Q6ZRV3 163 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 MSANTD1Q6ZTZ1 278 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 GPRIN1Q7Z2K8 1008 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 TMEM200AQ86VY9 491 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 PALB2Q86YC2 1186 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ADHFE1Q8IWW8 467 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ZNF808Q8N4W9 903 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 RTL3Q8N8U3 475 aaKnown RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 SMRP1Q8NCR6 262 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 OR52N2Q8NGI0 321 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 SAAL1Q96ER3 474 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 ANKRD36BP1Q96IX9 119 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 LENG8Q96PV6 779 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 MED15Q96RN5 788 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 FAM118BQ9BPY3 351 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 PAAF1Q9BRP4 392 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 FAM213AQ9BRX8 229 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 NDC1Q9BTX1 674 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 MRPL1Q9BYD6 325 aaKnown RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 GSTO2Q9H4Y5 243 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 POLE3Q9NRF9 147 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 BEX4Q9NWD9 120 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 RMND1Q9NWS8 449 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 DPP3Q9NY33 737 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 RBAKQ9NYW8 714 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 NINJ2Q9NZG7 142 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 SLCO3A1Q9UIG8 710 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 BARX2Q9UMQ3 279 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 CNTN6Q9UQ52 1028 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 HPSEQ9Y251 543 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 TBC1D30Q9Y2I9 924 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 CAB39Q9Y376 341 aaPredicted RBP6.14□□□□□ -1.43
VPS53-212ENST00000572259 VWA8A3KMH1 1905 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 C5orf42Q9H799 3197 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 XIRP2A4UGR9 3374 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 VCANP13611 3396 aa6.14□□□□□ -1.43
VPS53-212ENST00000572259 SPTBN5Q9NRC6 3674 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 MYH10P35580 1976 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CCDC195A0A1B0GUA6 201 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 A0A1W2PRV1 198 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CTAGE9A4FU28 777 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 SGK1O00141 431 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 TGFB1I1O43294 461 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CALUO43852 315 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 PEX11AO75192 247 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 RECQL5O94762 991 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 TRIM16O95361 564 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 EIF2S1P05198 315 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 SBK3P0C264 359 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 TMEM191BP0C7N4 346 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ODC1P11926 461 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ALADP13716 330 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 IL9P15248 144 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 EPCAMP16422 314 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 FERP16591 822 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CCNCP24863 283 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 OR1D2P34982 312 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 SLC11A2P49281 568 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 TAF6P49848 677 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 AP3M2P53677 418 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 YPEL5P62699 121 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 MXRA7P84157 204 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 TFAMQ00059 246 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 RALGDSQ12967 914 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 STIM1Q13586 685 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 RCN2Q14257 317 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 MED22Q15528 200 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 MAJINQ3KP22 176 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 NHSL2Q5HYW2 709 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 PPM1LQ5SGD2 360 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 RARS2Q5T160 578 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 TPGS2Q68CL5 300 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 SLC39A4Q6P5W5 647 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 SYCE2Q6PIF2 218 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 SARM1Q6SZW1 724 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CHST9Q7L1S5 443 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 NELFCDQ8IXH7 590 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 THEM5Q8N1Q8 247 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ELMOD1Q8N336 334 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms