RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LRRTM4Q86VH4 590 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 DSELQ8IZU8 1212 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS53-207ENST00000570510 C3orf20Q8ND61 904 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 DNAJB14Q8TBM8 379 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 COG1Q8WTW3 980 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 SLC20A1Q8WUM9 679 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 FAR1Q8WVX9 515 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 PIH1D2Q8WWB5 315 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 SYN2Q92777 582 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 LRFN5Q96NI6 719 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 EIF3CQ99613 913 aaKnown RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 WDR77Q9BQA1 342 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 SPATA16Q9BXB7 569 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 FAM207AQ9NSI2 230 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 ATXN10Q9UBB4 475 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 GPN3Q9UHW5 284 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 NOCTQ9UK39 431 aaKnown RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 PPIL1Q9Y3C6 166 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 BZW2Q9Y6E2 419 aaKnown RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 SVILO95425 2214 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 POLEQ07864 2286 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 A0A0J9YYE9 177 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 C1orf232A0A0U1RR37 186 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 A0A1W2PQJ5 194 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 GPR89AB7ZAQ6 455 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 GFPT2O94808 682 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ZBTB11O95625 1053 aaPredicted RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 TRBC1P01850 177 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 PDHA1P08559 390 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 STSP08842 583 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 GPR89BP0CG08 455 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ZNF7P17097 686 aaPredicted RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 CA5AP35218 305 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ARCN1P48444 511 aaKnown RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 PPP1CAP62136 330 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ADCY2Q08462 1091 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 CYP2A13Q16696 494 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ANKRD20A8PQ5CZ79 823 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 CRB2Q5IJ48 1285 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ZNF569Q5MCW4 686 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 DCAF10Q5QP82 559 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 PPP1R15BQ5SWA1 713 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 PLEKHS1Q5SXH7 462 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ERMARDQ5T6L9 678 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 LCN10Q6JVE6 187 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 MTFR2Q6P444 385 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 CERS6Q6ZMG9 384 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 BNC2Q6ZN30 1099 aaPredicted RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 MRGPRGQ86SM5 289 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 MRGPREQ86SM8 312 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ARHGAP12Q8IWW6 846 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 RAVER1Q8IY67 606 aaKnown RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 SYTL1Q8IYJ3 562 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 D2HGDHQ8N465 521 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ATPAF2Q8N5M1 289 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 SLC38A9Q8NBW4 561 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 INPP5DQ92835 1189 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 GBP5Q96PP8 586 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 CD180Q99467 661 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 MGME1Q9BQP7 344 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ZNF552Q9H707 407 aaPredicted RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 ZWILCHQ9H900 591 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ACTR5Q9H9F9 607 aaPredicted RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 TRIM39Q9HCM9 518 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 ATP13A2Q9NQ11 1180 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 HAUS2Q9NVX0 235 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 AIPL1Q9NZN9 384 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 PCSK1NQ9UHG2 260 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 CNOT6Q9ULM6 557 aaKnown RBP10.83□□□□□ -0.68
VPS53-207ENST00000570510 TTLL3Q9Y4R7 772 aa10.83□□□□□ -0.68
VPS53-207ENST00000570510 TRGV8A0A0C4DH27 118 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 FADS2P1A8MWK0 482 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 JRKO75564 520 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 SERPINC1P01008 464 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 GZMAP12544 262 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 ATP1A3P13637 1013 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 CD1EP15812 388 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 FECHP22830 423 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 HADHAP40939 763 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 PRKCIP41743 596 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 SSPNQ14714 243 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 NCF4Q15080 339 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 HIF1AQ16665 826 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 ZNF630Q2M218 657 aaPredicted RBP10.82□□□□□ -0.68
VPS53-207ENST00000570510 ZNF648Q5T619 568 aaPredicted RBP10.82□□□□□ -0.68
VPS53-207ENST00000570510 PRAMEF17Q5VTA0 474 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 MLIPQ5VWP3 458 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 FCRL6Q6DN72 434 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 ABRAXAS1Q6UWZ7 409 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 PHF13Q86YI8 300 aaPredicted RBP10.82□□□□□ -0.68
VPS53-207ENST00000570510 PGBD5Q8N414 524 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 NPWQ8N729 165 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 CHTF18Q8WVB6 975 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 TEKT4Q8WW24 435 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 ZNF501Q96CX3 271 aaPredicted RBP10.82□□□□□ -0.68
VPS53-207ENST00000570510 MAGEB10Q96LZ2 347 aaPredicted RBP10.82□□□□□ -0.68
VPS53-207ENST00000570510 SMIM14Q96QK8 99 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 C17orf62Q9BQA9 187 aa10.82□□□□□ -0.68
VPS53-207ENST00000570510 DPH2Q9BQC3 489 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms