RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PHYKPLQ8IUZ5 450 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ZBTB2Q8N680 514 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ZNF513Q8N8E2 541 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 GPR26Q8NDV2 337 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ACVR1CQ8NER5 493 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 OR2T3Q8NH03 318 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 CD200R1Q8TD46 325 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 C10orf82Q8WW14 230 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ASB12Q8WXK4 309 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 CCT6BQ92526 530 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 VOPP1Q96AW1 172 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 AP2M1Q96CW1 435 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 DTD2Q96FN9 168 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HIST1H2AHQ96KK5 128 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 HIST1H2AJQ99878 128 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 GABRG3Q99928 467 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 H2AFJQ9BTM1 129 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 CCDC28BQ9BUN5 200 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 MECRQ9BV79 373 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 PHF7Q9BWX1 381 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 GATA5Q9BWX5 397 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 C1QTNF3Q9BXJ4 246 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 ERVK-6Q9BXR3 956 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 KRTAP4-6Q9BYQ5 205 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 PLA2G2FQ9BZM2 168 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 RABEP2Q9H5N1 569 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 PRSS16Q9NQE7 514 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 PGPEP1Q9NXJ5 209 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 NUDT4Q9NZJ9 180 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 NCKAP1Q9Y2A7 1128 aa7.87□□□□□ -1.15
VPS39-213ENST00000570062 DNMT3AQ9Y6K1 912 aaPredicted RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 MYO18AQ92614 2054 aaKnown RBP7.87□□□□□ -1.15
VPS39-213ENST00000570062 DENND4CQ5VZ89 1909 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 NUP210Q8TEM1 1887 aaPredicted RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 C17orf113A0A1B0GUU1 675 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CFAP73A6NFT4 308 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 OTOL1A6NHN0 477 aaPredicted RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 SPECC1L-ADORA2AF8WAN1 911 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 BTN3A1O00481 513 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GAPDHSO14556 408 aaPredicted RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 KLK8O60259 260 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 KCNJ13O60928 360 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 VPS4BO75351 444 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CHEK2O96017 543 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 DNTTP04053 509 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CTSLP07711 333 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FGF4P08620 206 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GFAPP14136 432 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 EZRP15311 586 aaKnown RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 AKT1P31749 480 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 IL12RB1P42701 662 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ABCG1P45844 678 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GLRBP48167 497 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 LIG3P49916 1009 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 HNMTP50135 292 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 AQP5P55064 265 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 AP1S2P56377 157 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CDKL1Q00532 357 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 PPARDQ03181 441 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 DLG1Q12959 904 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GRIN2CQ14957 1233 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 KRT72Q14CN4 511 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CST6Q15828 149 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 TTC31Q49AM3 519 aaPredicted RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 ATP13A5Q4VNC0 1218 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CTSL3PQ5NE16 218 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GPRC6AQ5T6X5 926 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 SULT1C3Q6IMI6 304 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 KIAA1161Q6NSJ0 714 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ACAD11Q709F0 780 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 USP30Q70CQ3 517 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FRA10AC1Q70Z53 315 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 TSPAN33Q86UF1 283 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CLYBLQ8N0X4 340 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 SYNPOQ8N3V7 929 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FBXO39Q8N4B4 442 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 CCNYL1Q8N7R7 359 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 PHC3Q8NDX5 983 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ANKRD49Q8WVL7 239 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GLYATL1Q969I3 302 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 NUS1Q96E22 293 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 LINGO1Q96FE5 620 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 COQ10AQ96MF6 247 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 RILPQ96NA2 401 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FOPNLQ96NB1 174 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 TMEM120AQ9BXJ8 343 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ABCG8Q9H221 673 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 C12orf65Q9H3J6 166 aaKnown RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 ALG9Q9H6U8 611 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 TRIM39Q9HCM9 518 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ZNF358Q9NW07 568 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 HEY2Q9UBP5 337 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 ZFP69BQ9UJL9 534 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FZD4Q9ULV1 537 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 GPR34Q9UPC5 381 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 DNAJC16Q9Y2G8 782 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 FNDC3AQ9Y2H6 1198 aaKnown RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 MRPS17Q9Y2R5 130 aaKnown RBP7.86□□□□□ -1.15
VPS39-213ENST00000570062 SHROOM3Q8TF72 1996 aa7.86□□□□□ -1.15
VPS39-213ENST00000570062 HELZP42694 1942 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms