RNA–Protein interactions for RNA: ENST00000566240.1

CNOT1-209, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 4

Gene CNOT1, Length 567 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-209ENST00000566240 RNASEH2BQ5TBB1 312 aaKnown RBP4.92□□□□□ -1.62
CNOT1-209ENST00000566240 GAGE2AQ6NT46 116 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 RGMBQ6NW40 437 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MRPL10Q7Z7H8 261 aaKnown RBP4.92□□□□□ -1.62
CNOT1-209ENST00000566240 NUP93Q8N1F7 819 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 SIX6OS1Q8N1H7 587 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MSANTD4Q8NCY6 345 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 ACVR1CQ8NER5 493 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MAGEC3Q8TD91 643 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MR1Q95460 341 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 PRMT6Q96LA8 375 aaPredicted RBP4.92□□□□□ -1.62
CNOT1-209ENST00000566240 OR6C1Q96RD1 312 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MTERF1Q99551 399 aaKnown RBP4.92□□□□□ -1.62
CNOT1-209ENST00000566240 TUBB2BQ9BVA1 445 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 MRIQ9BWK5 157 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 NOX4Q9NPH5 578 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 GAGE2DQ9UEU5 116 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 FZD10Q9ULW2 581 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 SNX5Q9Y5X3 404 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 CCDC180Q9P1Z9 1646 aa4.92□□□□□ -1.62
CNOT1-209ENST00000566240 PRAG1Q86YV5 1406 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ANKUB1A6NFN9 424 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 INAFM1C9JVW0 142 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 H0YAE9 185 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 TRIM77I1YAP6 450 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 PLK4O00444 970 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 XRCC3O43542 346 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 SIX3O95343 332 aaPredicted RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 DANCRP0C864 163 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ATP6V1B1P15313 513 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ITGB8P26012 769 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 C21orf33P30042 268 aaPredicted RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 RFX2P48378 723 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 AMTP48728 403 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 CTSCP53634 463 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 LIMK1P53667 647 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 HNRNPKP61978 463 aaKnown RBP eCLIP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ROR2Q01974 943 aaKnown RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 NR1D2Q14995 579 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 RABEP1Q15276 862 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 CDC37Q16543 378 aaPredicted RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 C6orf136Q5SQH8 315 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 PXDC1Q5TGL8 231 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 FAM69BQ5VUD6 431 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ZBTB49Q6ZSB9 765 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 DET1Q7L5Y6 550 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 PIWIL3Q7Z3Z3 882 aaKnown RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 SPATA19Q7Z5L4 167 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 CCDC170Q8IYT3 715 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 OR5R1Q8NH85 324 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 THAP6Q8TBB0 222 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ZFAND2BQ8WV99 257 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ATL1Q8WXF7 558 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ROBO4Q8WZ75 1007 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 EXT2Q93063 718 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ZG16BQ96DA0 208 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 LRRC3BQ96PB8 259 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 C16orf70Q9BSU1 422 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 MRPL9Q9BYD2 267 aaKnown RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 WNT5BQ9H1J7 359 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 FOXP1Q9H334 677 aaPredicted RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 DDX43Q9NXZ2 648 aaKnown RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 AGO1Q9UL18 857 aaKnown RBP4.91□□□□□ -1.62
CNOT1-209ENST00000566240 SNX9Q9Y5X1 595 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 PTGDR2Q9Y5Y4 395 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 ZNF804BA4D1E1 1349 aa4.91□□□□□ -1.62
CNOT1-209ENST00000566240 LY6G6EA0A0G2JKS1 128 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 A0A0U1RQK1 487 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 ZNF320A2RRD8 509 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 HTR3EA5X5Y0 456 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 OR6C75A6NL08 312 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 DNM1LO00429 736 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 TNFRSF13BO14836 293 aaPredicted RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 CLIC2O15247 247 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 STX6O43752 255 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 MED24O75448 989 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 TMEM191BP0C7N4 346 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 SRCP12931 536 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 HOXB2P14652 356 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 CASTP20810 708 aaKnown RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 HOXD3P31249 432 aaPredicted RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 MTHFRP42898 656 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 ABATP80404 500 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 PDE1BQ01064 536 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 YWHAHQ04917 246 aaPredicted RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 CRYZQ08257 329 aaKnown RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 PTK6Q13882 451 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 NFE2L1Q14494 772 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 SLMAPQ14BN4 828 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 ODF2Q5BJF6 829 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 ZRANB3Q5FWF4 1079 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 FAM109BQ6ICB4 259 aaPredicted RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 COLCA1Q6ZS62 124 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 MSANTD1Q6ZTZ1 278 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 ZNF34Q8IZ26 560 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 PAPD5Q8NDF8 572 aaKnown RBP4.9□□□□□ -1.63
CNOT1-209ENST00000566240 OR2AJ1Q8NGZ0 328 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 BBS10Q8TAM1 723 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 SLC44A1Q8WWI5 657 aa4.9□□□□□ -1.63
CNOT1-209ENST00000566240 WASF1Q92558 559 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms