RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 P3H4Q92791 437 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 TTC25Q96NG3 672 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 QKIQ96PU8 341 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-216ENST00000565316 ZCCHC2Q9C0B9 1178 aaKnown RBP16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A7Q9HAW7 530 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A10Q9HAW8 530 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A8Q9HAW9 530 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 SMOXQ9NWM0 555 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 KLHL8Q9P2G9 620 aaPredicted RBP16.78■□□□□ 0.28
CLN3-216ENST00000565316 TRIM10Q9UDY6 481 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 MRPS18BQ9Y676 258 aaKnown RBP16.78■□□□□ 0.28
CLN3-216ENST00000565316 GLYATL1P3A0A0U1RQE8 302 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 HACD1B0YJ81 288 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 AKR1B15C9JRZ8 316 aaPredicted RBP16.77■□□□□ 0.28
CLN3-216ENST00000565316 SPAG6O75602 509 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 ZRANB2O95218 330 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-216ENST00000565316 NDUFA10O95299 355 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 FECHP22830 423 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 DLSTP36957 453 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 CASRP41180 1078 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 RPE65Q16518 533 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 SKIDA1Q1XH10 827 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 GPRC6AQ5T6X5 926 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 ATP1A1-AS1Q5TC04 95 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 IRGCQ6NXR0 463 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 FAM151BQ6UXP7 276 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 FAM83HQ6ZRV2 1179 aaPredicted RBP16.77■□□□□ 0.28
CLN3-216ENST00000565316 FAM92BQ6ZTR7 304 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 PID1Q7Z2X4 250 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 GLT6D1Q7Z4J2 308 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 ZC3H18Q86VM9 953 aaKnown RBP16.77■□□□□ 0.28
CLN3-216ENST00000565316 BLOC1S5Q8TDH9 187 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 SLC41A2Q96JW4 573 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 EPN3Q9H201 632 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 ANAPC2Q9UJX6 822 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 CROTQ9UKG9 612 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 TRHDEQ9UKU6 1024 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 KCTD3Q9Y597 815 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 PCDHGA6Q9Y5G7 932 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 KCNMB2Q9Y691 235 aa16.77■□□□□ 0.28
CLN3-216ENST00000565316 GPR39O43194 453 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 KIAA0754O94854 1291 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 LCA5LO95447 670 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 RECKO95980 971 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 TNNT3P45378 269 aaPredicted RBP16.76■□□□□ 0.27
CLN3-216ENST00000565316 ITGA9Q13797 1035 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 PPP2R5EQ16537 467 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 SKOR2Q2VWA4 1001 aaPredicted RBP16.76■□□□□ 0.27
CLN3-216ENST00000565316 METRNLQ641Q3 311 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 C16orf46Q6P387 395 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 CYB5D1Q6P9G0 228 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 TMEM220Q6QAJ8 160 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 BBS12Q6ZW61 710 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 RASGRP3Q8IV61 690 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 IPMKQ8NFU5 416 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 GPR150Q8NGU9 434 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 UBXN4Q92575 508 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 STAMBPL1Q96FJ0 436 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 ABHD17AQ96GS6 310 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 ZNF514Q96K75 400 aaPredicted RBP16.76■□□□□ 0.27
CLN3-216ENST00000565316 FCRL4Q96PJ5 515 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 GOLPH3Q9H4A6 298 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 ZNF71Q9NQZ8 489 aaPredicted RBP16.76■□□□□ 0.27
CLN3-216ENST00000565316 PKP3Q9Y446 797 aa16.76■□□□□ 0.27
CLN3-216ENST00000565316 ZNF106Q9H2Y7 1883 aaKnown RBP16.76■□□□□ 0.27
CLN3-216ENST00000565316 IGHV5-51A0A0C4DH38 117 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 CYSRT1A8MQ03 144 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 F5H423 210 aaPredicted RBP16.75■□□□□ 0.27
CLN3-216ENST00000565316 BUD23O43709 281 aaKnown RBP16.75■□□□□ 0.27
CLN3-216ENST00000565316 MAGEA1P43355 309 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 MARCKSL1P49006 195 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 PPP1CAP62136 330 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 XRCC4Q13426 336 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 KLHL35Q6PF15 583 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 PPP1R3BQ86XI6 285 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 ELMO2Q96JJ3 720 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 GORASP1Q9BQQ3 440 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 KCND3Q9UK17 655 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 PADI1Q9ULC6 663 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 PCDHB3Q9Y5E6 796 aa16.75■□□□□ 0.27
CLN3-216ENST00000565316 OR2AG2A6NM03 316 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 AGTP01019 485 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 MT-ND3P03897 115 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 MTHFD1P11586 935 aaKnown RBP16.74■□□□□ 0.27
CLN3-216ENST00000565316 FOLR1P15328 257 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 FOXK1P85037 733 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 SEPT6Q14141 434 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 NFE2L1Q14494 772 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 LONRF2Q1L5Z9 754 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 C11orf63Q6NUN7 778 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 BPHLQ86WA6 291 aaPredicted RBP16.74■□□□□ 0.27
CLN3-216ENST00000565316 KMT5CQ86Y97 462 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 ZNF398Q8TD17 642 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 ZFPM2Q8WW38 1151 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 HAUS1Q96CS2 278 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 RNF31Q96EP0 1072 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 RBM41Q96IZ5 413 aaKnown RBP16.74■□□□□ 0.27
CLN3-216ENST00000565316 GBA3Q9H227 469 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 TSPY26PQ9H489 355 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 PDE7BQ9NP56 450 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms